Warning (2): rename(/var/www/logs/error.log,/var/www/logs/error.log.1781996408): No such file or directory [CORE/src/Log/Engine/FileLog.php, line 206]
Code Context
        } else {
            $result = rename($filePath, $filePath . '.' . time());
        }
rename - [internal], line ??
Cake\Log\Engine\FileLog::_rotateFile() - CORE/src/Log/Engine/FileLog.php, line 206
Cake\Log\Engine\FileLog::log() - CORE/src/Log/Engine/FileLog.php, line 134
Cake\Log\Log::write() - CORE/src/Log/Log.php, line 392
Cake\Log\Log::warning() - CORE/src/Log/Log.php, line 477
DebugKit\ToolbarService::isSuspiciouslyProduction() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 166
DebugKit\ToolbarService::isEnabled() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 105
DebugKit\Plugin::bootstrap() - ROOT/vendor/cakephp/debug_kit/src/Plugin.php, line 48
Cake\Http\BaseApplication::pluginBootstrap() - CORE/src/Http/BaseApplication.php, line 182
Cake\Http\Server::bootstrap() - CORE/src/Http/Server.php, line 111
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 79
[main] - ROOT/html/index.php, line 40

Warning (2): unlink(/var/www/logs/error.log.1781982280) [<a href='https://secure.php.net/function.unlink'>function.unlink</a>]: No such file or directory [CORE/src/Log/Engine/FileLog.php, line 213]
Code Context
            while ($filesToDelete > 0) {
                unlink(array_shift($files));
                $filesToDelete--;
unlink - [internal], line ??
Cake\Log\Engine\FileLog::_rotateFile() - CORE/src/Log/Engine/FileLog.php, line 213
Cake\Log\Engine\FileLog::log() - CORE/src/Log/Engine/FileLog.php, line 134
Cake\Log\Log::write() - CORE/src/Log/Log.php, line 392
Cake\Log\Log::warning() - CORE/src/Log/Log.php, line 477
DebugKit\ToolbarService::isSuspiciouslyProduction() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 166
DebugKit\ToolbarService::isEnabled() - ROOT/vendor/cakephp/debug_kit/src/ToolbarService.php, line 105
DebugKit\Plugin::bootstrap() - ROOT/vendor/cakephp/debug_kit/src/Plugin.php, line 48
Cake\Http\BaseApplication::pluginBootstrap() - CORE/src/Http/BaseApplication.php, line 182
Cake\Http\Server::bootstrap() - CORE/src/Http/Server.php, line 111
Cake\Http\Server::run() - CORE/src/Http/Server.php, line 79
[main] - ROOT/html/index.php, line 40

Warning (512): Unable to emit headers. Headers sent in file=/var/www/vendor/cakephp/cakephp/src/Error/Debugger.php line=988 [CORE/src/Http/ResponseEmitter.php, line 71]
Code Context
            $message = "Unable to emit headers. Headers sent in file=$file line=$line";
            trigger_error($message, E_USER_WARNING);
        }
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 71
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 128
[main] - ROOT/html/index.php, line 40

Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/vendor/cakephp/cakephp/src/Error/Debugger.php:988) [CORE/src/Http/ResponseEmitter.php, line 164]
Code Context
        $reasonPhrase = $response->getReasonPhrase();
        header(sprintf(
            'HTTP/%s %d%s',
header - [internal], line ??
Cake\Http\ResponseEmitter::emitStatusLine() - CORE/src/Http/ResponseEmitter.php, line 164
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 74
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 128
[main] - ROOT/html/index.php, line 40

Warning (2): Cannot modify header information - headers already sent by (output started at /var/www/vendor/cakephp/cakephp/src/Error/Debugger.php:988) [CORE/src/Http/ResponseEmitter.php, line 197]
Code Context
            foreach ($values as $value) {
                header(sprintf(
                    '%s: %s',
header - [internal], line ??
Cake\Http\ResponseEmitter::emitHeaders() - CORE/src/Http/ResponseEmitter.php, line 197
Cake\Http\ResponseEmitter::emit() - CORE/src/Http/ResponseEmitter.php, line 75
Cake\Http\Server::emit() - CORE/src/Http/Server.php, line 128
[main] - ROOT/html/index.php, line 40

Example: RPL12P6, GAPDH, ENSG00000237984

BaboonBonoboBudgerigarCatChickenChimpanzeeChinese hamsterCowCrab-eating macaqueDogDolphinDrosophilaEgyptian rousetteFrogGibbonGolden snub-nosed monkeyGorillaGreater horseshoe batGreater mouse-eared batGreen monkeyHorseHumanKuhl's pipistrelleLizardMarmosetMouseMouse lemurOpossumOrangutanPainted TurtlePale spear-nosed bat PandaPigPlatypusRabbitRatRhesusSheepSlothTasmanian DevilTurkeyVelvety free-tailed batZebra FinchZebrafish

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Summary

Retrocopy Name	ATP5MFP5
Species	Callithrix jacchus
Coordinates	chr5:119470769-119471187  UCSC
Strand	+
Parental Sequence	XM_035282441.1
Parental seq. overlap	398 bp
Parental seq. overlap (%)	73.4%
Genomic Region	Intragenic (LOC118153855)
Retrocopy Summary	ATP5MFP5, located on chr5:119470769-119471187, is a retrocopy of the parental gene ATP5MF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	ATP5MF
Full Name	N/A
Also known as	ATP5J2
Coordinate	chr2:12491281-12500700
Strand	+
Gene summary	N/A

Homology

	Species	Scientific Name	Retrocopy
	Human	Homo sapiens	Without Homology
	Chimpanzee	Pan troglodytes	Without Homology
	Bonobo	Pan paniscus	Without Homology
	Gorilla	Gorilla gorilla	Without Homology
	Orangutan	Pongo abelii	Without Homology
	Gibbon	Nomascus leucogenys	Without Homology
	Green monkey	Chlorocebus sabaeus	Without Homology
	Crab-eating macaque	Macaca fascicularis	Without Homology
	Rhesus	Macaca mulatta	Without Homology
	Baboon	Papio anubis	Without Homology
	Golden snub-nosed monkey	Rhinopithecus roxellana	Without Homology
	Mouse lemur	Microcebus murinus	Without Homology
	Mouse	Mus musculus	Without Homology
	Rat	Rattus norvegicus	Without Homology
	Chinese hamster	Cricetulus griseus	Without Homology
	Rabbit	Oryctolagus cuniculus	Without Homology
	Pig	Sus scrofa	Without Homology
	Cow	Bos taurus	Without Homology
	Sheep	Ovis aries	Without Homology
	Dolphin	Tursiops truncatus	Without Homology
	Horse	Equus caballus	Without Homology
	Dog	Canis familiaris	Without Homology
	Panda	Ailuropoda melanoleuca	Without Homology
	Cat	Felis catus	Without Homology
	Pale spear-nosed bat	Phyllostomus discolor	Without Homology
	Velvety free-tailed bat	Molossus molossus	Without Homology
	Greater mouse-eared bat	Myotis myotis	Without Homology
	Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
	Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
	Egyptian rousette	Rousettus aegyptiacus	Without Homology
	Sloth	Choloepus didactylus	Without Homology
	Tasmanian Devil	Sarcophilus harrisii	Without Homology
	Opossum	Monodelphis domestica	Without Homology
	Platypus	Ornithorhynchus anatinus	Without Homology
	Chicken	Gallus gallus	Without Homology
	Turkey	Meleagris gallopavo	Without Homology
	Zebra Finch	Taeniopygia guttata	Without Homology
	Budgerigar	Melopsittacus undulatus	Without Homology
	Painted Turtle	Chrysemys picta	Without Homology
	Lizard	Anolis Carolinensis	Without Homology
	Frog	Xenopus tropicalis	Without Homology
	Zebrafish	Danio rerio	Without Homology
	Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>ATP5MFP5

ACAGCGGACACCAGTACTCCAAGATGGCTCGGTCCTACCATTGAAGGACAAGAAGCTTCTGGAGGTCAAACTAGGAGAGCTGCCAAGCTGGATCTTGATGCGGGACTTCAGCCCTAGTGGCATTGTCCGAGTGTTTCGAAGAGGTTACTACCAGTACTATAACAAAGATACCAACGTGAAGAAGGGCAGGATCGCGGGGATTACCATGGTGCTGGCATGCTACGTGGTCTTCAACTACACCTTTTCCTACGAGGAGCCCAAGCATGAGCGGCAACGCAAGTACCACTGAAGAAGACAAGCTCTGCACTCCCCTCCACGGCCTTCTTGGCTTGAGCCCCTCCATAAGGAACACAGTCTCGATTATTGCTGAAGCCTTTCATATCCTAATGGAATTAACCTCGAAGTAAAAGATGActggt

>XM_035282441.1

GGCCCTCTAGTAAGCAGCCCGAGTATTCGCAGTTGTGACTTGCTTCCCGTGAGCCTCTGCTCTCCGCTCCCGATGGGGCGTGCGTTTCCTACCCAGCAGTCCTCGCGCGGCCTGGCGCAGCGAACACCAGTACTCCAAGATGGCGTCAGTCGTACCATTGAAGGACAAGAAACTTCTGGAGGTCAAACTAGGAGAGCTGCCAAGCTGGATCTTGATGCGGGACTTCAGCCCTAGTGGCATTGTGGGAGCGTTTCGAAGAGGTTACTACCGGTACTATAACAAATATATCAACGTGAAGAAGGGCAGCATCGCGGGGATTACCATGGTGCTGGCATGCTACGTGGTCTTCAACTACACCTTTTCCTACAAGGAGCTCAAGCATGAGCGGCGACGCAAGTACCACTGAAGAAGACAAGCTCTGCACTCCCCTGCACGACCTTCTTGGCTTGAGCCCCTCCATAAGGAACACAGTCTCGATTATTGCTGAATCCTTTCGTATCCTAATGGAATTAACCTCCAAATAAAAGATGACTGGTATGtgt

Publications

PMID - Link	Title