Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CALM2P1
Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr5:125078279-125079303  UCSC
Strand +
Parental Sequence XM_008980735.2
Parental seq. overlap 905 bp
Parental seq. overlap (%) 53.3%
Genomic Region Intergenic
Retrocopy Summary CALM2P1, located on chr5:125078279-125079303, is a retrocopy of the parental gene CALM2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CALM2
Full Name N/A
Also known as CALM1|calmodulin
Coordinate chr14:64403025-64419105
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CALM2P1
Chimpanzee Pan troglodytes CALM2P6
Bonobo Pan paniscus CALM2P5
Gorilla Gorilla gorilla CALM2P1
Orangutan Pongo abelii CALM2P10
Gibbon Nomascus leucogenys CALM2P4
Green monkey Chlorocebus sabaeus CALM2P4
Crab-eating macaque Macaca fascicularis CALM2P6
Rhesus Macaca mulatta CALM2P6
Baboon Papio anubis CALM2P7
Golden snub-nosed monkey Rhinopithecus roxellana CALM2P12
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CALM2P1
GGAGTGATTGTGTGGTCGCCTCTCAGAAACTGTTAGTGCTTGCAGCATGGCTGACCAACTGAATGAAGAGCATATTCAAGAATTCAAAGAAGGTTTTTCTCTATTTGACAGAGATGATGACGAAACTATAACAACAAAGGAATTGGAAACAATAATGAGGTCTCTTAGGTAGAATCCCACAAAAGCAGGGTTACCGGACATGATTAAGGAAGTAGATGCTGATGGTAATGGAACAACTGACTTTCCTGAATTTCTGACAATGATgacaagaaaaacagaagacacaGACAGTGAAGAAGAAattggaaaagcattccatgtgTTTGATAAGGATGGCAATGGCTCTATCAGTGCAGAACTTCGCCATGGCATGACAAACCCTGGAGAGAAGTTAACAGATGATGAGGTTGGTGAAATGATCAGGGAAGCAGGTATTGATGGTGATGGTCAAGTAAACCATGAAGAGTTTACAAATGGTGACAGCAAAGTGAAGACATTGTACTGGATGTGTTGAATTTCTTATACAAAATGGtctatttatttgcctttttctttctttataacttATCTCTAGAAGCTTTCTTCCTACCATCAAAAAAATGCATGCATAGTAACCAGGACTTCATTCCTGCatgttttcttctcttatctTACTGTCATTGTTCTGaaatcttattttagaaaattgatcAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACAGCTAAACTTGCATGAAGTTGGTCAAGTGGGGTATGTAACTTTGCATAGATAATGGACAGTCGACAATATGAATATAAAAGTTGCATTATTGCAAAAGGAGTGTATCATCCAGGTACTCataccctatttttttttttactactggTTCTATaccagaaatattttcctttattgttacttgctttttaaactttgtttagccacttaaagaaaatttggttatGGCAGAATTTCCCTCAAATACATTCCAAGCTGTATATttgttttccaattaaaaaatt
>XM_008980735.2
GGGAAGCTTTCAGCTTCATTATCAACTTAAGGTGTTTTCCTCTACCCCTCAATAAGGGGCGGGAAAGCGTGTGAGTGTGGCAGGGAAGGATGGGTGGAGGAGGAAGGTTCTCCAGCCAAACGCAAAGCCAGCGACTTTGCCGCCTGGCGCAGTTGCCAGGACAGCGCGGCCGGAGCAGCAACGGCAGAAGCCGCACTCGGGTGACGCATTGCAGGTACGAACCAGCCAATCACCGGCTGGCTCAACAACCATCGGGGTACGCGTCACCGCCACGATGCTCCTCCGCGCCGCAAAGTAGCGCCTCTCAGGAGCGGTTCCACCGGACTTTTAACGGCTCGCTAGGGAATGAAACCCACTTACGTCATCCGTTCGCCCACTTTACTTGATCTCTTGCCTTGTCGACCAAATAACTGTGAAGAAAGAGGTCCCGAGAAGAGTTTGAGGGGAGGGGTGTTGACCGGGACTCGTTTGTGATGTTCCGTTATCTGAAGCGGCGGAGGGATCTGGCGGAGGGAGGTGTTTATGAGGCGCTGGGGGCGGAGGAGGAGAATTAGTCCGAGTGAAGCGAGCGAGTCGAGTGGTTGTGTGGTCGCGTCTCGGAAACCGGTAGCGCTTGCAGCATGGCTGACCAACTGACTGAAGAGCAGATTGCAGAATTCAAAGAAGCTTTTTCACTATTTGACAAAGATGGTGATGGAACTATAACAACAAAGGAATTGGGAACTGTAATGAGGTCTCTTGGGCAGAATCCCACAGAAGCAGAGTTACAGGACATGATTAATGAAGTAGATGCTGATGGTAATGGCACaattgactttcctgaatttCTGACAATGATGGCgagaaaaatgaaagacacaGACAGTGAAGAAGAAATTAGAGAAGCATTCCGTGTGTTTGATAAGgatGGCAATGGCTATATTAGTGCTGCAGAACTTCGCCATGTGATGACAAACCTTGGAGAGAAATTAACAGATGAAGAAGTTGATGAAATGATAAGGGAAGCAGATATTGATGGTGATGGTCAAGTAAACTATGAAGAGTTTGTACAAATGATGACAGCAAAGTGAAGACCTTGTACAGAATGTGTTAAATTTCTTGTACAAAattgtttatttgccttttctttgttTGTAACTTATCTGTAAAAGGTTTCTCCctactgtcaaaaaaaatatgcatGTATAGTAATTAGGATTTCATTCCTCCATGTTTTCTTCCCTTATCTTACTGTCATTGTCTTGAAaccttattttagaaaattgatcAAGTAACATGTTGCATGTGGCTTACTCTGGATATATCTAAGCCCTTCTGCACATCTGAAGTTAGATGGAGTTGGTCAAATGAGGGAACATCTGGGTTATGcctttttttaaagtagttttctttaGGAACTGTCAGCATGTTGTTGTTGAAGTGTGGAGTTGTAACTCTGCGTGGACTATGGACAGTCAATAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTGTATTATCCAGGTACTCGTACACTATTTTTTTGTACTGCTGGTCCTGTACCAGAAACCTTTTATTGTtacttgctttttaaactttgttttagcCACTTAAAGAAAATCTGCTTATGGCACAATTTGCCTCAAATCCATTCCAAGttgtatatttgttttccaataaaaaaattacaacttaCCCAA

Publications

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