Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name INIPP1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr3:68285762-68286715  UCSC
Strand -
Parental Sequence XM_002743206.4
Parental seq. overlap 853 bp
Parental seq. overlap (%) 20.2%
Genomic Region Intragenic (HSPA4L)
Retrocopy Summary INIPP1, located on chr3:68285762-68286715, is a retrocopy of the parental gene INIP. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name INIP
Full Name N/A
Also known as C1H9orf80
Coordinate chr1:159306011-159339677
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens INIPP1
Chimpanzee Pan troglodytes INIPP1
Bonobo Pan paniscus INIPP1
Gorilla Gorilla gorilla INIPP1
Orangutan Pongo abelii INIPP1
Green monkey Chlorocebus sabaeus INIPP1
Crab-eating macaque Macaca fascicularis INIPP1
Rhesus Macaca mulatta INIPP1
Baboon Papio anubis INIPP1
Golden snub-nosed monkey Rhinopithecus roxellana INIPP1
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>INIPP1
TCCCAGGTGATTGGTGAGTTGCTGACCAGTTGCCACTGGACATaattgaaacaaaggaaaatggcAGCAAACTACATGACAgggttttcaaaacaaaaatagatttgcAGTCTTGGCAGAActaggcaaaaagaaaactacttatGTAGAATCAGTCTTCAACAAATCATCCTGGAGCTAGCATCGTACTCTCGAGACCCTCTCTTAATATGCTGAGCAACAGCATATTGCAGCCTAACAGAAGGCAGCTTAGCAACATGCTCATGCACATTCATCCAGATGCTTCATAACTCAAGACTCTGCATTTGGGAACCGTATTCTTCCTGTTTTACTTTGCCTTGAcccagaatgaagaaaatatttgtgatggAAAAGTGACTTTGTAATATCAAATGCCAAAGCTACTATCAGTGTGAACTGTGACTTTCTGAATTTTGGTGaactttgatattttttctttgtttaaaagaaaggaatgtaTAAGTGAAAATAGAATGAAGGGTAACCAGGATGATGAGAGCGTAGACACCATATCATCCAAAGAATTGAAATGTCCCATGACTGTAACTTTTTTGTAATGCTGTTGAACTCTCAGACTCCAAATTTGATGGTCACAAAATCATTTCCCAACCCCTAGCAAGTTTGACTGAATAGATCACGTCCACAGTAGATTTTCAAGAATCATTTATACTACCTAACTTTAAAGAAACAaggatgcttttaaaaaatgaaccaatAGGCTTAAATCATTTACATCCGTATTTGCTGTTTATGGGATTGATGTCAGTGAACCTTTTCAGTTTATAGTCAACATGTATCATCCTGAAATATTCTTTTATGAATTCGTAACTACTTCCCCCTTTCTCACTTTAAAACAAACCCCAAGAACAAATTACTAACCAGTCTTAACCATCTTTTATAAACATATGCCCATATAAATGATgtgactaaata
>XM_002743206.4
aaaaaaaagtgacGTCTACATTGAGGTGGCAGCTAAAATGCGAATCACGACGGGCGGTGGCCGTTGGGTCCCGGCGGGAGGCGGGGTTTCCGCTCCCTGGGGCGCACGTCAGTCAGGAGGCGGAAGCGCAGCGGGGGCGGGAAGGTTGTAGTGCTGCGAGTTGAGCTCCTTTTGCCTAAGTGGTCGCGCCCCCTTTAAGAGCAGCTATTGGAAGTCGAGGCGGTCCCGGCGTCCTAGCGTCCCAGatgattgTGAAGTGCTGACCAACTGCCACTGGACATAATtgaaacaaaataggaaaatggCAGCAAACTCTTCAGGACAAGgttttcaaaacaaaaatagagttgCAATCTTGGCAGAACtggacaaagagaaaagaaaactacttaTGCAGAACCAGTCTTCAACAAATCATCCTGGAGCTAGCATTGCACTCTCGAGACCATCCCTTAATAAGGACTTCCGGGATCACGCTGAGCAACAGCATATTGCAGCGCAACAGAAAGCAGCTTTGCAGcACGCTCATGCACATTCTTCTGGATACTTCATAACTCAAGACTCTGCATTTGGGAACCTTATTCTTCCTGTTTTACCTCGCCTTGAcccagaatgaagaaaatatttgtgatggAAAAATGACTTTGTAATAGCAAATGCCAAAGCTACTATCATTCAGTGCTAGATGAACTGTGACTTTCAGAATTTTGGTGAACtctgatattttttgtttgtctaaaaGAAAGGAATGTGGAAGTGAAAGCAGAGAAAGGATAACCAGATGATGAGAGCTGTGGAAGCTGTGGACACAAGGAATCGATTGTGTACCGTGACTGTAACTCTTTTTGTGATGCTGTTTAACTCTCAATCGGATTCTGAATTGGATGGTCACAAAATCAGTCCCCAACCCCTACCAAGTTTGACTGAATATATCATGTCCACAGTAGATTTTCAAGAATCATTTATAGTACTTAACTTTAAAGAAACaaggtgcttttaaaaaatgaaccaatAGGCTTAAATCAGTTACATCCATATTTGCTCTTTATAGGATTGGTGTCAGTGCACCTTTCGAGTTTATAGTCAACATGTATCATCCTGAAATATTCTTTCTGAATCATAACTACATCCTCTCTCTCACTTTAAAGCAAACCCCAAGAATCAGTTACTAACCAGTCTTAACCATCTTTTATAAACATACGCCCTTATAAATGATGTGACTAAATGCAGTTAAAACTAATAGGAAATGTAGTGGTTTTTGTACATCCTTTTAACTTAGTGTCACCACATAAATGGTGAGTTTGCGTGGTCCTAGTGTCCATTTTTGTTCTAACTGAAAACgtaatggctgggtgtggtggctcatgcctgtaatcccagcactttgggaggccgaggcaggcagatcactggaggtcaggaatttgagaccaggctggccaacatggtgaaaccctgtctctactaaaaatacaaaaattagccaggtgtggtagtgctcgcctgtaatcccagctacttgggaggctgaggcaggagaatcacttgaacccaggaggcagggattgcagtgagtcaagatggagtcactgcactccagcctgggtgacagtgagacttcatctcaaaaaaaaaagaaaaaagaaaagaaaaaaacttatcaTGCAAGTTGAGCTccttttttaattactttaagtAGGAAGGAGTTTAGGTTAAGAAAGTCTCTCAAAATGACCCATATTTAGCAGTATCTGGGGTGCTTATTTAAATATGCAGTCCCATTGCCCTACCCTAGTCCTACAGAATTAGAATCTGATTCAAAATAAAGTCTGAAAACCATGAAATAGAGAATTTTATGAAACATCTTGTACAAATTTTCATGATGTATTTATATAGGCATGGGTTTGTAGAACCCTGAAACTTAGAGGTCATTTAGCTAAaatctacatttctttttaacttttaataggATTGAAATGATATTTTACACTGTATCATAGATAGactattttatataactttttgtAACTGACTTCATCTTAGCCTCAAGTCCCATCCTCTCTGGTGGTAGGGTAAAAACTGAAAATTCCAGTTTGGGTCAATATTTAGTGAAAGTTCTACTTTCTTTTCAGAGAGTTTCTTCTCCCCCTTCTTCCTTAGATATTTTCACCAAACACAGCCCCATCCTACTCAAACCAAGGGAAGCAAGGGTGGACAATTCTAGAATTGGCTGTGCCATGTAGGTTTTTTTGAGAATTTGAActgatttccttcattttgatGAGGTGGCAACTGTCCCCATTGTAATGGTCACCATTACAGCGAGGACAGCCTTACTTTTGCAGCTGCAGAGCTCCTCAGGGGGCCTCTGGCTCCTGTCCTTCCTCAGGTCCATCCAGCTACTCCTTGGGCCTCCTTATGGTAGCCCTCACAGTCTTGAGGTAATTTCACTAGGCTTCTGCTCTCTGTGATCTACAACATAACTGACATGGTTCTAAATCTGTCTCTAGGGAAATAACAAATTAGTATATTTTCTACACTATTGAAGCCTCTACCTAATGTATGACTTTTGTAGCTCAGGTAAAGAGACCTTTTTACCAGTGGTATCCTTTCTAGTTTGTTAGCCTTTTAAATAGATGTGGTCTAAATCCTGGCTAGGAAGCACTTCTCCACCCCTCTGCTTTGAGTCACAAATTCAATTTCCTATGTATTTATTAATACCTACAGATAAAGCACTGTGCTTTGGGGGACACAAAGGTGACTGGCACCTGCTCTTTTAGGAGGTCACAGTGCAGAGGATCCTATTCTGGCATACCAGTAGTGTGTCCAAAccacagcctaggcaacatagcaagacccctgtctctactaaaaattaaaaaaaaaataaagatttgctAAATGTGCTGGTGCATGTGTATAGCCCCAGccacttcggaggctgaggtgggaggattgcttgagcctgggaggtcgaagctgcagtgagccatgattgcacaactgcactccagcctcagcaacagagtgagaccctgtctctaaatcaATCAGGCAAGCCAGAATGCAGTAGTGGCCTGAGAGGCATCCTGGAACCTGGTGGGGTCTGGCTAGGCTTAGATGTGTTCATGTGATTTTACTTGGCAAGGGAAGGAAGAGCTGCTCCACGTGCAGAGCAAGGTTTCAGAATGAGAAGTGCAGGCACTGCAGAGGGCGGGGGAAAGGGCAGCAGTGGACTGGGAAGCCCTCAGGTAGAGTTCAGCATTTCTTCCCTCAGTGGGGATGAGTTTCATGAACTCAGTGCATGTCCCTCCCTCTGTAAGATGAGAACAGCACATACTCTGGCTATGTCAGAAATTGTCTAGTATTTTTCAAAGTGAAGCCTCAACCCATTACTGAGTTGAGAAGCCAACTTAATGGTTGACCAGGCTGTgaccagcatttaaaaaaataaaaataaaaaacatctttAGTTTACTGCATGTAGAAATAGGTGGTTTTGCCTCTTGAatcttctgtttctgtgtgttcatgtatgtgtatattttactTTGTATTGTTGGTTTTTTAAggtacagagtcttgctctgtcatccaggctggagtgtaatggcagagtcatagctcactgtcagACTCCTccaatccctgggctcaagcaatcctctacccttagactcccaagtagctgggactacaggcacatgccaccatgcccaacaaatttttttatttttgtagagacagcatcttgctatgttacccaggctggccttgaactcttggcctcaagcagtcctctggatgcttccacctcggcctcctaaagtgctgagatgacaggtgtgagccactgcacctggcttactTACTTTGTCTATTGTCTGTTCCATTAGAATGTAAAGTCTTGGcaagaatttttgtttatttccttctcttcctttcctttcttcctcttttacttTGTTCACTACTGTATtccacataaaatatatttggcatatagtaggtgctcaatatgttaaaggaaggaatgaaagaatttATATGACTTGAGTtgcaatataaaatgtatatttttttttactgtgagttatgactgaaaaaaaaaaaaaaacctttgaaagCACTTCTAAATAATGCAGATGTCAGTGCTTTGTATGACCCTGGAATAAAAACTGAAATGACTCAGTAA

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