Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name KRT19P8
Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr9:95500031-95501012  UCSC
Strand +
Parental Sequence XM_008997572.3
Parental seq. overlap 849 bp
Parental seq. overlap (%) 44.8%
Genomic Region Intragenic (TMCC3)
Retrocopy Summary KRT19P8, located on chr9:95500031-95501012, is a retrocopy of the parental gene KRT19. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name KRT19
Full Name N/A
Also known as -
Coordinate chr5:90488104-90493755
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens KRT19P2
Chimpanzee Pan troglodytes KRT19P4
Bonobo Pan paniscus KRT19P5
Gorilla Gorilla gorilla KRT19P5
Orangutan Pongo abelii KRT19P5
Gibbon Nomascus leucogenys KRT19P2
Green monkey Chlorocebus sabaeus KRT19P4
Crab-eating macaque Macaca fascicularis KRT19P5
Rhesus Macaca mulatta LOC707129P7
Baboon Papio anubis KRT19P4
Golden snub-nosed monkey Rhinopithecus roxellana KRT19P5
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>KRT19P8
AGCCAACAGCGAGCTGGAGGTGAAGCTCTGAGACTTGCACCAGAAGCAGGGGCCCGGGCCCTCCCGTGACTACAGCCACCACTACAAGACCATTGAGGACCTGCGGGACAAGATTCTTGGTGCCACTCTTGAGAACTCCAGGACTGTCCTGCAGATTGGCAATGCCCATCTGGCTACAGATGACTTCCAAACCAAGTCTGAGATCCAGGAGGCTCTGCGCATGAGCGTGGAGGCTGACATCAACGGCCTGCACAGGGTGTTGGAGAGGTAACCCTGGCCGGGACTGATcgggaagtgcaaatcaaaggGCTGAAGGAGGAGCTGGACTACCTGAAGAACCATGAGAAGAAAATTAGTGCCCTTCGGGGTCAAGTGGGAGGCCAGGTCAATGTGGAGGTGGATTCAGCTCCAGCCACCGATCTCTCCAAGATCCTGAATGACAGGTGAAGCCAACATGAGGTCATAGTTGAGCAGAACCAGAAGGATGCTGAAGCCAGGTTCACCAGCAGGACAGAGGAACTGAATTGGAAGGTTGCTGTCCACACACAGCAGCTCCAGGTGAGCAGGTCTGAGGTCACTGACCTGTGGTGCACCCTCCAGAGTCTTGAGATTGAGCTGCAGTAGCAGCTCAGCATGAACACTGCCTTGGAAGGCACACTGGCAAAAACAGGCGTGCTTTGGAGTCCAGCTGGCACAGATCCAGGCGCTGATCTGAGGTAGTGAAGCCCAGCTGAGCAATGTGTGGGCTGATGGTGAGTGGCAGAATCAGGAGTACCCACGGCTCCTACAGCAGGAGATTGCCACCTACTGCAGCTGCTCCAGGGCCAGAAGATCACTATAACCACCTGTCTACCTCCAAGGTCCTCTCAGGCGGCAGGCTCTGGGGCTTCTGTTCTCATCAGAGGGTGTCTCCTGGGTAGGGGATGGGAAGGAAGAGACCCTGACACCCCTGGCTCTTCCCCTGACCTGCCAGTAAAATTTT
>XM_008997572.3
gtcacaccactgcactcctgcctgggggacagagactccgtctccaaaaaacaaacaaacaaaaaaacccaaaccaaaccaaaatcaCTGTGCCAGGGTGTGTAGGAATATGACCCCAGAGGGACCGTAATTCCCAATGGGTGTCAAACTCTGGGTGCTCTTAAAGGGTGAGGGTCAGAACGTGGGTGTCTAAGTACGTCCCTGTTGGGGGAAAGCCTGGAAGAGGGTCTGCAGAACTGGAGTGGTTGAGTGTGGGTGGGAGCTTCTGCGAGGATTGGGGTGGGGCAGCTCTGGATGGCAGGGGCCTCTGGTCTCTGGGAGGAGAGGGTTGCGGGCAGAGCCGCCAGGAATTGACCAATGGGTAGAGCGCCCGTATTTGCTCTCAGGAGCCTGCAAATTCCTCAGGGCTCAGATATCCACCCCTAACACCATTCTTCCCTTCCCCCCATTCCCCGCCCCACTTCCTGGCCCCCGGCATAAAAGGCGCCCGGTGAGGGCCTCGCCGCGCCTCCGGTGATCACAGCCTCTGGGACCAGGGTCGCTCGGTCCGTGCTCCGCCTCGCCATGACTTCCTACAGCTATCGCCAGTCGTCCACGTCGTCCTTCGGGGGCCTGGGCGGCGGCTCCGTGCGTTTTGGGCCGGGTGTCGCCTTTCGCGCACCTAGCATACACGGGGGCTCCGGCGGCCGCGGCGTGTCCGTGTCCTCCACTCGCTTCGTGTCCTCGTCCTCCTCGGGGGGCTACGGCGGCGGCTATGGCGGCATCCTGGCTACTTCCGACGGGCTGCTGGCGGGCAACGAGAAGCTCACCATGCAGAACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAGGCGGCCAACGGCGAGCTGGAGGTGAAGATCCGCGACTGGTACCAGAAGCAGGGGCCCGGGCCCTCCCGCGACTACAGCCACTACTACAAGACCATCCAGGACCTGCGGGACCAGattcttGGTGCCACCATTGAGAACTCCAGGATTGTCCTGCAGATTGACAATGCCCGTCTGGCTGCAGATGACTTCCGAACCAAGTTTGAGACGGAGCAGGCTTTGCGCATGAGCGTGGAGGCCGACATCAACGGCCTGCGCAGAGTGCTGGATGAGCTGACCCTGGCCAGGACTGACCTGGAAATGCAGATTGAAGGGCTGAAGGAAGAGCTGGCCTACCTGAAGAAGAACCATGAGGAGGAACTCAGTGTGCTGAGGGGCCAAGTGGGAGGCCAGGTTAGTGTGGAGGTGGATTCAGCTCCAGGCACCGATCTCGCCAAGATCCTGAGTGACATGCGAAGCCAATATGAGGTCATGGCCGAGCAGAACCGGAAGGATGCTGAAGCCTGGTTCACCAGCCGGAGTGAAGAACTGAACCGGGAGGTCGCTGTCCACAGAGAGCAGCTCCAGATGAGCAACACCGAGGTCAGTGACCTGCGGCGCACCCTCCAGGGTCTTGAGATTGAGCTGCAGTCACAGCTGAGCATGAAAGCTGGCTTGGAAAGCACACTGGCAGAAACGGAGGCGCGCTTTGGAGCCCAGCTGGCGGAGATCCAGGCACGGATCAGCGGTATTGAAGCCCAGCTGGGCGATGTGCGGGCTGATAGTGAGCGGCAGAATCAGGAGTACCATCGGCTCTTGGACGTCAAGTCGCGGCTGGAGCAGGAGATTGCCACCTACCGCAGCCTGCTGGAGGGCCAGGAAGATCGCTACAACAACCTGTCTGCCTCCAAGGTCCTCTGAGAAGGCAGCGGGCCCGGGGCTTCTGTTGTCCTTTGGAGGGTGTCTCCTGGGTGAGGAGATGGGAAGGAAGGGACCCTTATCCCCAGGCACGTCCCTTGACCTGCCAATAAAATTTTATGGTTCAAGGGAG

Publications

PMID - Link Title