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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100390732P8
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr18:32255130-32255301  UCSC
Strand +
Parental Sequence XM_035289725.1
Parental seq. overlap 143 bp
Parental seq. overlap (%) 29.4%
Genomic Region Intergenic
Retrocopy Summary LOC100390732P8, located on chr18:32255130-32255301, is a retrocopy of the parental gene LOC100390732. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100390732
Full Name N/A
Also known as -
Coordinate chrX:73921671-73927841
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens COX7BP5
Chimpanzee Pan troglodytes COX7BP1
Bonobo Pan paniscus LOC100986707P1
Gorilla Gorilla gorilla LOC101147253P1
Orangutan Pongo abelii COX7BP3
Gibbon Nomascus leucogenys LOC100602515P4
Green monkey Chlorocebus sabaeus LOC103232235P7
Crab-eating macaque Macaca fascicularis LOC102124180P3
Rhesus Macaca mulatta COX7BP3
Baboon Papio anubis LOC101013709P1
Golden snub-nosed monkey Rhinopithecus roxellana LOC104669550P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100390732P8
tttttgttttttagcactCTTCAAAGGTACCTGAAGCAAATTTGCACAGAAGCAGCCGCTGCATTGCCTCAGTTCTATCTTCACTTTCACGATGTTTTCCTTGGTCAAAAACTCATCAAGTCATCTCCAAGTTCCAAGCATTCAGCAAACAATGGTGAGGCACAGCCACCAG
>XM_035289725.1
ATCTCATTACGGATCCCGGCTGaaagccattttgtttttcagcGCTCTTCAAGGGTATCTGAAGCGAATTTGCACCAAAGCAGCAGTTGTGTTGCTGCAGTTTGATCTTCACCTTCACGATGTTTCCCCTGGTCAAAAACGCACTGAGTCGTCTCCAAGttCGAAGCATTCAGCAAACAATGGCAAGACAGAGCCACCAGAAACGTACACCTGATTTTCATGACAAATACGGTAATGCTATATTAGCTGGTGGAGCTACTTTCTGTATTACTATGTGGACATATGTAATAACACAAATCGGAATAGAATGGAACCTGTCCCCTGTTGGCAGAGTCACCccaaaggaatggagaaatcAGCAATAATCCCAGCTGGTGTAATAATGAAGTGTTGAAAAAAACAGCTCATAATTGATGCCAAGTTAAAGCACTGTGTACCCATTAAGATATGgcattattgaagaaataaagtacatttgaaaccttca

Publications

PMID - Link Title