Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100392033P25
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Plot displaying the genomic locations of a retrocopy (in chr5) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr5:9880164-9880478  UCSC
Strand -
Parental Sequence XM_002745681.5
Parental seq. overlap 270 bp
Parental seq. overlap (%) 28.7%
Genomic Region Intergenic
Retrocopy Summary LOC100392033P25, located on chr5:9880164-9880478, is a retrocopy of the parental gene LOC100392033. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100392033
Full Name N/A
Also known as RPL7A
Coordinate chr3:119456704-119460148
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL7AP112
Chimpanzee Pan troglodytes RPL7AP66
Bonobo Pan paniscus RPL7AP66
Gorilla Gorilla gorilla RPL7AP69
Orangutan Pongo abelii RPL7AP66
Gibbon Nomascus leucogenys RPL7AP42
Green monkey Chlorocebus sabaeus LOC103240161P4
Crab-eating macaque Macaca fascicularis RPL7AP45
Rhesus Macaca mulatta RPL7AP45
Baboon Papio anubis RPL7AP58
Golden snub-nosed monkey Rhinopithecus roxellana RPL7AP58
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100392033P25
GTCTTCCTGCCTGCCCTGTGTCATAAAACAGGGATCCCTTACTGCATTATCAAGGGGAAGGCAAGACTGGGATGTCTAGCCCACAGGAAGACCTGCACCACTGTCGCCTTCACACTGCTTAACTGGGAGGACAAAGGCGCTTTGGCTAAGCTGGTGGAAGCTCTCAGGACCGGCTTAGCCAACGACAGATACGATGAGATCTGCCCTCAGTGGGGAGGCAATGTCCCAGGTCCTGAGTCTGTGGCTCTCATTGCAAAGCTCAAAAAGGCAAAGGCTAATGAACTTGCGACTAAACTGGATTAAATGTACACTGtt
>XM_002745681.5
tcccGCGGCAGCATCAAATCTCGCGATCTTCGAGGAAGTATACTTATTACCCACAattccatttcctttctctttctttctgctgctCAAGATGCCGAAAGGAAAGAAGGCCAAGGGGAAGAAGGTGGCTCCGGCCCCTGCTGTCGTGAAGAAGCAGGAGGCTAAGAAAGTGGTAAATCCCCTGTTTGAAAAACGGCCTAAAAATTTTGGTATTGGACAGGACATCCAGCCCAAAAGAGACCTCACCCGCTTTGTCAAATGGCCCCGCTATATCAGGTTGCAGCGGCAGAGAGCCATCCTCTACAAGCGGCTGAAAGTGCCTCCTGCAATTAACCAGTTCACCCAGGCCCTGGACCGCCAAACAGCTACTCAACTGCTTAAGCTGGCCCACAAGTATAGAccagagacaaagcaagagaagaagcagagGCTGTTGGCCCGGGCCGAGAAGAAAGCGGCTGGCAAAGGGGACGTCCCCACTAAGAGACCACCTGTCCTTCGAGCAGGAGTCAACACAATCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGACGTGGATCCCATTGAGCTGGTCGTCTTCTTGCCTGCCCTGTGTCGAAAAATGGGAGTCCCTTACTGCATTATCAAGGGGAAGGCAAGACTGGGACGTCTAGTCCACAGGAAGACCTGCACTACTGTCGCCTTCACACAGGTTAACGCGGAAGACAAAGGTGCCCTGGCTAAGCTGGTGGAAGCCATCCGCACCAATTACAATGACAGATACGATGAGatCCGCCGTCACTGGGGAGGCAATGTCCTGGGTCCCAAGTCTGTGGCTCGCATTGCAAAGCTAGAGAAGGCAAAAGCTAAAGAGCTTGCCACGAAACTGGGTTAAATTTacactgtaaataaaaataaaacaatgaaaattttccTTCA

Publications

PMID - Link Title
No publications available for this retrocopy