Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100392213P3
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr10:48521602-48522417  UCSC
Strand +
Parental Sequence XM_009003724.3
Parental seq. overlap 688 bp
Parental seq. overlap (%) 38.3%
Genomic Region Intergenic
Retrocopy Summary LOC100392213P3, located on chr10:48521602-48522417, is a retrocopy of the parental gene LOC100392213. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100392213
Full Name N/A
Also known as TUBA1B
Coordinate chr9:67980801-67985275
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens TUBAP11
Chimpanzee Pan troglodytes TUBA1BP3
Bonobo Pan paniscus LOC103782837P3
Gorilla Gorilla gorilla LOC101148972P3
Orangutan Pongo abelii TUBA1BP4
Gibbon Nomascus leucogenys LOC100604350P1
Green monkey Chlorocebus sabaeus TUBA1BP3
Crab-eating macaque Macaca fascicularis TUBA1BP2
Rhesus Macaca mulatta TUBA1BP2
Baboon Papio anubis LOC101018365P5
Golden snub-nosed monkey Rhinopithecus roxellana LOC104679722P2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100392213P3
GTTACCTCGACTCTTAGCTTCTCAGGGAAAGTAACTGGGACTTGTCTTCTTCTGTTGCCTTTGCCTTTTAATCCCTAGCCACAGTGCATGAGCACATCTCTGTCCACATTCGCCAGGCTGATGTCCAGATTGATAATCCCTGCTCGGACCTCTGCTGCCTGGAAGAAGGCATCCAGCCTGATGGCCAGATACCAAGTGACAAGACCACTGGGGCAGATGACTTCTTTGACATCTTCAGTGAGACGGGCTGGCAAGTATATGCCCAGGGCAGTGTTTGAAGACCTGGAGCCCACATTCATTGACAGAGTTCACACTGCCATCTACCAACAGCTCTTCCACGTTGAGCAGCTCATCACAGACAAGGAAGATACTGCCAATAAGTATGTCCAAGGGCACTATGCCATTGGCAAGGATATCACTGGCTTCATGTTCAGCCAAATTCTCAAACTGGCCAACCAGTACACAAGTCTTTAGGGTTTCTTGGTTTTCCACAGCTTTGTGGGGGGAACTTGTTCTGGGTTCACCTCCCTGCTGATAGAATGTCTCTTTGTTCATTATGGCAAGAAGTCCAAGGTGGAGTTCATTTATTCAGATTTCCACAGCTATAGTTTAGCCCTATAACTCCATCCTCACTACCCACACCACCTTGGAGCACTCTGAGTATGCCTTTGTGGTAGACATCTGCCATAGAAACCTCAATATTGAGTGCCCAACCTACACTAACTTTAACTGCCTTATTATGCCCTCTATCACTGCTTCCCTCAGAGTTGGTGGCTCCCTGAATGGTCATCTGACAGAATTCTAGACCAACTTGGT
>XM_009003724.3
GCGGCCACGCGAGGGGAGGGGGCTCGGGGCTGGAGCCCGCCTTTGCGGCGGCCAGGCCTGGCGCCGAGTGGGCGCGCCGGGCCGGAGGAGGGGCTCCCGGCCGCGGCACCGCCTGTGCCCGCCCGCCCCTCCGCAGCCACTACTTAAGAGGCTCCAGCGCTCGCCCCGCCCCAGTGCGTTACTTACCTCGACTCTTAGCTTGTCGGGGACGGTAACCGGGACCCGGTGTCTCCTCCTGTCGCCTTCGCCTCCTAATCCCTAGCCACTATGCGTGAGTGCATCTCcatccacgttggccaggctggtgtccagaTTGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAACATGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCAGTGAGACGGGTGCTGGCAAGCACGTGCCCCGGGCAGTGTTTGTAGACCTGGAACCCACGGTCATTGATGAAGTTCGCACTGGCACCTACCGCCAGCTCTTCCACCCTGAACAGCTCATCACAGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCACTACACCATCGGCAAGGAGATCATTGACCTCGTGTTGGACCGAATTCGTAAACTGGCTGACCAGTGCACCGGTCTCCAGGGCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGTTCTGGGTTCACCTCCCTGCTCATGGAACGGCTCTCAGTTGATTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCGGCGCCCCAGGTTTCCACGGCTGTAGTTGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAGCGCCCAACCTACACTAATCTTAACCGCCTTATTAGCCAAATTGTGTCCTCCATCACTGCTTCCCTGAGATTTGATGGAGCCCTGAATGTTGACCTGACAgaattccagaccaacctggtGCCCTATCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCTTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGTGGTGACGTGGTTCCCAAAGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCAGCATCCAGTTTGTGGATTGGTGCCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCTCCCACTGTGGTGCCTGGTGGAGACCTGGCCAAGGTACAGAGAGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTACGTGGGtgaggggatggaggaaggagagtTTTCAGAGGCCCGTGAGGACATGGCTGCCCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGCGAAGAATACTAATTATCCATTCCTTTTGGCCCTGCAGCATGTCATGCTCCCAGAATTTCAGCTTCAACTTAGCTGACAGGCATTAAAGCTTTCTGGTTAGATTGTTTTCACTCAGTTACCATGTCTTCCATGTGTACCTGTAGTTTTTCCATCATGTCTCAAAGTAAAGTCATTAACTTCAAAA

Publications

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