Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100398208P5
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr12:59812611-59813409  UCSC
Strand +
Parental Sequence XM_035295244.1
Parental seq. overlap 661 bp
Parental seq. overlap (%) 78.2%
Genomic Region Intragenic (HERC4)
Retrocopy Summary LOC100398208P5, located on chr12:59812611-59813409, is a retrocopy of the parental gene LOC100398208. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100398208
Full Name N/A
Also known as -
Coordinate chr4:35794925-35796292
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS3AP38
Chimpanzee Pan troglodytes LOC461536P30
Bonobo Pan paniscus LOC100975318P29
Gorilla Gorilla gorilla LOC101144197P26
Orangutan Pongo abelii RPS3AP25
Gibbon Nomascus leucogenys RPS3AP33
Green monkey Chlorocebus sabaeus LOC103236378P14
Crab-eating macaque Macaca fascicularis RPS3AP25
Rhesus Macaca mulatta LOC703455P24
Baboon Papio anubis LOC101003493P30
Golden snub-nosed monkey Rhinopithecus roxellana RPS3AP29
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100398208P5
CCTCTGAGCAGCACCATGACATTTGGCAAGAACAAGCACCTTATGAAAGGTGACAAATAAGGAGCCAAGAAATGGTTGTctactttctaaaaataattggTATGGTATGAAAGTACTTGCTATGTATAGTATAAGAAATACTGGAGAAACACTAGTCACCAGGACTCAAGGAACCAAAATTATATCTGATGGCCtcaagggttgtgtgtgtgtgaagtgaaCCTTTCTGATCTGCAGAATGatgaaattgtgttttaaaaattcaagcgGACTACTGAGGATGTTCAGGGCCAAAACTGTCCAACTTCCACAGCATGGATCTTACCCATGACAAAATGAGTTCCGTGGCCAAAAACTGATAGATCATGAAAGAAGTTCATGTTCATTGGTCAAGACCACTGATGGTTATTTGCTTCGActgttctgtgttggttttactAAGAAATGCAACAGTCTGATACAGAAGACCTCTTACTCTCAGCACCAACAGGTCTGCCAAATCCTGAAGAAGGTGATGAAAATCATGATCCAAGAGGTTCAGACAAGTGACTTGAAAGAAGTGGTCAATAAATTGATTCCTGACATtggaaaagatagagaaaaggcTTGCCAGTCTGTTTATCTTCTCCATGCTTGACCttgttagaaaagtaaaaatgctgaagaCTCCCAAGTTTGAATTGGGAAAACCAGGGAGCTTCATGGCAAAGGTAGCAGTTCTAGAAAGGCTACTGGAGATGTGACAGGTGCCGAAGTTATATGAGCAGATGGATGTGGACTACAAATCCAAGAATCTGTT
>XM_035295244.1
TCTCTGAGCAGCACCATGGCGGTTGGCAAGAATCAGCGCCTTACGAAAGGCAGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGatccattttctaagaaagattgGTATGATGTaaaagcacccgctatgttcaatataagaaatattggaaAGATGCTAGTCACCAGGACCCAAGGAACCAAAATTGCATCTGACGGCCTCAAGGGTCGAGTGTTTGAAGTTAGTCTTGCTGATTTGCAGAATGATGAGGTTGCATTTAGGAAATTCAAGCTGATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTTACCCGTGACAAAATGTGTTCCATGGTCAAAAAATGGCAGATGATTGAAGCTCATGTTGATGTCAAGACTACCGGTGGTTACTTGCTTCGtctgttctgtgttggttttactAAAAAACGCAACAATCAGATACGGAAGACCTCTTATGCTCAGCACCAACAGGTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCAAGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAAATGGATTCCAGACAGCATTGGGAAAGACATGGAAAAGCCCTGCCAATCTGTTTATCCTCTCCATGATGTCTctgttagaaaagtaaaaatgctgaagaagccCAAGTTTGACTTGGGAAAACTCATGGAGCTTCGTGGTGAAGGCAGTAGCTCTGGAAAAGCCACTGACGATGAGACAGGTGCTAAAGTTGAACGAGCTGATGGATATGAACCACCACTCCAAGAATCTGTTTAAAGTTCAGACTTATAATAGTGGCAAATAGA

Publications

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