Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100406796P10
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr3:70093755-70094460  UCSC
Strand +
Parental Sequence XM_002760588.5
Parental seq. overlap 610 bp
Parental seq. overlap (%) 39.7%
Genomic Region Intergenic
Retrocopy Summary LOC100406796P10, located on chr3:70093755-70094460, is a retrocopy of the parental gene LOC100406796. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100406796
Full Name N/A
Also known as H3F3A
Coordinate chr19:20295510-20305107
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens H3P15
Chimpanzee Pan troglodytes HIST1H3AP11
Bonobo Pan paniscus LOC100970414P8
Gorilla Gorilla gorilla LOC101132116P8
Orangutan Pongo abelii LOC100433071P8
Gibbon Nomascus leucogenys LOC100599068P14
Crab-eating macaque Macaca fascicularis H3F3AP19
Rhesus Macaca mulatta LOC699443P12
Baboon Papio anubis LOC101010649P10
Green monkey Chlorocebus sabaeus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100406796P10
AAGAAATTGTTCAGGACTTTAAAACAGATCTACACTTCCAGAGCCCAGCTATTGGTGTTTAGCAGAAGGTAACTGAAATCTATCTGGTTGGTCTTTAAGAAGATACCAACCTGTGTGCTATTTATCCATGCTACACATGTAACAATTATGTCAAAAGACAATCAGCTAGCACTCCACATACATGGAGAACATGCTTAAAAATCTGTTATGAAGGAAAACATTtcattctcaaaaaagaaaaaaaggtcttATCTCTGTTTTTGGTAGTTTAGAATGttagatatttttttcccatGGGTTCAAAAGGTACCCAAGTGTATGATTGCAAGTGGAAAAATAGGGGACATAAATCCCATATTggcagtttttccattttcatttgtgtgtgaatttttaatgtaaattcaggaaaataaaacattaatgtaAATCAAATGTTTGGTGAACAAGTTTCAGTGGTttaactttataataattataaataaagctgttaaatttttctgaacaattacagcattttaatttttaaaaaacaagtacaTTTCTTATTGACAGCAACTAAATGGTGTTTGTAGCATTTTTGTCATTCAGTGAATTCCATCCATTCACTATGCTTTTCTCACTGAGTTATCCTAAATGCAAGCACGTTTTTAATGTTGTTTGTCTTCTGTgatgttcttgtaaatctgctataaaatacagtaaa
>XM_002760588.5
CGCGCGGTGGcggcccctccctcccctccccgcctcGGCCCCAGACGCCCGCAGGCCGGGCGTTCACCCGCCGCGCCTTCGCCCAACCTCCCCTCCCCCCGCTTCACTCCGGGCACCCCAAACCCGGGCATCGGGGGTTCGACGCTGTGCGCGCACGGAGCGGGATGGCAGTGTAGGGCCGGGGGCAGGGGTTGGCCGGGGGCGGGCGGCAGTTTCGGCGGGAGCAGGAGGCCCCTCAGCGTGTCTTTTGTGTTTGTACACACACGGCGCGAGGCGGCCGGGAGGAGGGAGCAGGCGGCGTGCGGGGGAGGGGCGAGCGCGCGCCAGCGAACTGGCGcgcggggggaggggagggggcggggcgcgAGCAGCGCTGCGGGGGCGGGGCCGAGCCTTCCCTCCATTGTGTGTGATTGGCTGGCGCGCGGCGCGGGGGCGGGGCGGCGTGTGTTGGGGGATAGCCTCGGTGTCAGCCATCTTTCAATTGTGTTCGCAGCCGCCGCCGCGCCGCCGTCGCTCTCCAACGCCAGCGCCGCCTCTAGCTCGCCGAGCTCCAACCGAAGGAGAAGGGGGGTAAGTAAGGAGGTCTCTATACCATGGCTCGTACAAAGCAGACTGCCCGCAAATCTACCGGTGGTAAAGCACCCAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTACTGGAGGGGTGAAGAAACCTCATCGTTACAGgcctGGTACTGTGGCACTCCGTGAAATTAGACGTTATCAGAAGTCCACTGAACTTCTGATTCGCAAACTTCCCTTCCAGCGTCTGGTGCGAGAAATTGCTCAGGACTTTAAAACAGATCTGCGCTTCCAGAGCGCAGCTATTGGTGCTTTGCAGGAGGCAAGTGAGGCCTATCTGGTTGGCCTTTTTGAAGACACCAACCTTTGTGCTATCCATGCCAAACGTGTAACAATTATGCCAAAAGATATCCAGCTAGCACGCCGCATACGTGGAGAGCGTGCTTAAGAATCCACTATGATGGGAAAcatttcattctaaaaaaaaaaaaaaattctcttcttcctgttatTGGTAGTTCTGAAcgttagataattttttttccatggggTCAAAAGGTACCTAAGTATATGATTGCGAGTGGAAAAATAGGGGACAGAAATCAGGTATTggcagtttttccattttcatttgtgtgtgaatttttaatataaatgcggAGACGTAAAGCATTAATGCAagttaaaatgtttcagtgaacaaGTTTCAGTGGTtcaactttataataattataaataaacctgttaaatttttctggacaatgccagcatttggatttttttaaaacaagtaaatttcTTATTGACGGCAACTAAATGGTGTTTGTAGCATTTTTATCATACAGTAGATTCCATCCATTCACTATACTTTTCTAACTGAGTTGTCCTACATGCAAGTACATGTTTTTAATGTTGTCTGTCTTCTGTGCTGTTCCTGTAAGTTtgctattaaaatacattaaactatA

Publications

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