Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name LOC100413381P1
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Plot displaying the genomic locations of a retrocopy (in chr9) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr9:108724465-108725003  UCSC
Strand -
Parental Sequence XM_035270201.1
Parental seq. overlap 445 bp
Parental seq. overlap (%) 12.3%
Genomic Region Intergenic
Retrocopy Summary LOC100413381P1, located on chr9:108724465-108725003, is a retrocopy of the parental gene LOC100413381. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name LOC100413381
Full Name N/A
Also known as -
Coordinate chr1:208204122-208217256
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens APOBEC3GP1
Chimpanzee Pan troglodytes APOBEC3GP1
Bonobo Pan paniscus APOBEC3GP1
Gorilla Gorilla gorilla APOBEC3GP1
Orangutan Pongo abelii APOBEC3GP1
Gibbon Nomascus leucogenys APOBEC3BP1
Green monkey Chlorocebus sabaeus LOC103223331P1
Crab-eating macaque Macaca fascicularis APOBEC3GP1
Rhesus Macaca mulatta APOBEC3GP1
Baboon Papio anubis APOBEC3AP1
Golden snub-nosed monkey Rhinopithecus roxellana APOBEC3GP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>LOC100413381P1
CATGCAGAGAAGTGCTTCCTGTACCTGATTTCCTTTTGGAAGCTGGAGTGGGCCCAGTGCTACAGGGTCCCCTGGTTCATCTCCTGGAGTCCCTGCTTCAGCTGTGTCCAGCAAGTGGCTGCATTTTCTTGGGAGAACAGACATGTGAACCTGCACATCTTCACTGCCCACATCTATGATGACCTCCCAGGATATGAGGAGGGGCTGTACATGCTGCTGATGGCTGGGACCCAAATCTCTATCATGACCTCCGGGAAGTTTAGGCACTGCTGGGACACCTTTGTGGACCACCAGAGATGTCCCTTCCAGCCCTAGAGTGGACTTGATGAGCACAGTCAAGCCCTAAGTGGGAGGCTGTAGGTCGTTCTCCAGAATCAGGAAAACCAAAGGATGGACCTCAGTCTCTAAGGAAGGCAGAAGACCTGTGTTGAGCAGCAGAATGGAAatcttctttcaagaaatgcAAACTGGCCATTCAACACCATCTCCAGCTGATCAGTGGACACCAGCAAAGCAATGAGCTCCTGacaagtagattt
>XM_035270201.1
ttcaccatattggtcagtctggtcccaaactcccgacctcaggtaatctgcccgccttggcctcccaaagtgctgggattacaggtgtgagccactgcgctcagcctgtCCATCTGTTTCTGATGGCAACAGAAACCTTCACCTTAAAAAAACCATCATCAGGAGTTTACTTTGTGCAGAGGGAAGATGAGCTTCCATGCAGGTAGGGGCGCTCCTGCTCGCCCAGCCCCATGTAGCCTCCTCGGTATCTGCCTGCAGGTTGTAGAGGAGTTCAGAGCCTCTACAGAGAGCACAGCTTCTCCCACTGGAACAGACTCCCCTTAAAGGAACAGACTCGCCTTAAAGCAATCTATTCAGGAAGATTATTTCAAGGATGCAATGTACATGAATTCCTTCAAAATATGCTTGGATGGACTTAAATAATCagaaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgcatgTTCTTGGTCCACAGGGAACCCCTTGAGAGGTCCCTGTGGGCAGTGAGCCTGTTTGTAGACACCTGCCTCCCCTCCTTGATGTTACAGACACCACAATCCCTCTGAGGGACTGACCTGCCCCCCACCCTCTGGAAGCTGGGAGGTTGGAAGAGGGAGGTGTGTGAAGGAGCCAGCACACAGCTGGGGACTCAAGGCACATCAGCCTTCGTTTCTGTTGTGCAGAGTCTGTGCTTCCTTCGCCACTGGAGTCTCAAAACCTTCCCCCACTCACCTGGGAGTTGCTGCTCCAAACTCTGGACAGACATTAGGGCTGGGCAGGGGGTGGTGCAGAGGGGACTCCAGCCTGCCCATCCACCAGGTGAGGGGGCACCTGCCTCTCTTTCAGCCTGGTCTGGACCCACCTCCCGGGCTCTGGCTGCAATGCCTTTCTGCAATGTCTTGGCCTTGGCTCCTGCCCAAAACAAAGACAGAGCAACCTGTCTTTATGAGCGGTTCCTCTGCCAGGGGGAGGGACCCGGAGAAAACCAGAAGGAGGGCCAGAGCCAGAGAAAGGTAAAGCACCCCAGGGCCTCCCACACCAGTGCCTGAGCAGGAATGGGGAGGTGCCAGGACTCACAAGGCCCTGCGAGGTCACTTTAAGAGGGCTGTCCAGCTGCAAGATACTGTAAGCGGAAAGTGAAACCACAGAGCTTTGAAAAAGAGCGGGACTGCGACAAGCCTAGCAAAGCGGCTGGGCATGAATCCACAGATCAGAAATCCCATGGAGCGGATGTATCGAGGCACCTTCTACTACAACTTTGAAAATGAACCCGTCCTCCCTGGTCGGTCCTACAGCTGGCTGTGCTACGAAGTGAAGATAAAGAAGGACCCCTCAAAACTCCCTTGGGACACAGGGGTCTTTCGGGGCCAGGTCTATTTGAAGCCTCAACACCACGCGGAGATGAGATTCCTCCATTGGTTCCGAAAGTGGAAGCTGCATAGTGACCAGGAGTACGAGGTCACCTGGTTTGTGTCCTGGAGCCCCTGCCCAGTGTGTGCAAGGAATGTGGCCGAGTTCCTGACTGAGGATGGGAAGGTCACTCTGACCATCTTTGTGGCCCGCCTCTACTACTTCTGGATCCCACGTTACCGGGAGGAGCTTCGCAGACTCTGTCAGAGAAGAGACAGTCCACATGCCACCATGAAGATCATGAGTTATGGCGaaTTTCAACACTGTTGGGACAAGTTTGTGGACAACAAAACAGAGACATTCGCTCCTTGGAATGAGCTGCCTAAAAATTATACATTACTGCGCATCACCCTGGGGGAGGTTCTCAGAGACCTGATGGATCCAGACACATTCACTTACAACTTTAACAATGACCCTTCGGTCCTTGGACGGCACCAGACCTACCTGTGTTACGAGGTGGAGCACCTGCACAGTGGCACCTGGGTCCCGCTGCACCAGCACAGGGGCTTCATACTCAACGAGGCTTCAAATAGTCTCAGTTTCCCTGAAGGCCGCCATGCAGAGCTGTGCCTCCTGGACCTCATTTTGTTTTGGAAGCTGGACCCGGCCCAGCGCTACAGGGTCACCTGCTTCATCTCCTGGAGCCCCTGCTTCTGCTGTGCCCAGGAGGTGGCTGAATTCCTTCAAGAGAACCCACACGTGAACCTGCGCATCTTCGCTGCCCGCATTTATGATTATCGCCCAGGATATGAGGAGGGGCTGTgcaggctgagctgggctggggccCCAATTTCCATGATGAAATACAGTGAGTTTAGTCACTGCTGGGACACCTTTGTGGATCACCAGGGACACCCCTTCCAGCCCTGGGAGGGCCTAGATGAGCACAGCCAAGCCCTGAGTGGGAGGCTGCAGGCCATTCTCCAGGGAAACTGATGAATGATCCTCAGTCTCTAAGGAAGGCAGAGACCTGGGCTGAGCAGCGGAATAAAAGATCTTCTTCCAAGAAATGCAACCGGGCTATTCACCGCCATCTCCAGCTGATCACAGACGCCAGCAAAGCAATGCGCTCCTGACaagtagattattttaaaaatcagagcgTGTAAGGTTAGTGTAGTGAAAGGAGAAAAGACCCCAAGTCAGGCGAGCATGTTTTATTAACCGGCCGGGCTGCCCCACAACAGTCGGAGGAGGCAGCCCCGAGCTTATAAAACGAGGGGTTTATATGGGGTGAGAGGAGCATAAGGGAGTTTCGGGACTGAGATAATCTATCCGCTTGTAACAGGCAGAGATATTTTGTTAACTTGTGACCTACTTACAATACatcatcctgtgacttttgtgggggcagttttttaaaaaatcagggttTTACAGATATGTTTTAAGCAGGAATTTACAAGTGTGGATAGCAAACACTGGTTTTCCCCTGTCCTCTCCCAAGCTGCCCGGATGGCTGTAATCAGGctttgcagccttgacctggcACCCGGATAGGAGTTCAGAAATGCAGCTGCGGAGCACCAGAGTGTGCAGGGCTCAGCTTTCGTGGAGGGGGTTTCTGAGGCAGCTTGTCCCTAACAGGGAGAATTACTTTTAATCAAAAATGTATGCGAAGTTTCAGGAATACAGTAGTGAGACTGCTCAGAAAGGTTTCAAACCTACTCATCCGGTGATGAATTGAATTGGCTTCATGTTAAAACGTGTGCTCTGAATGAGGAGAtccctaaacaggctttgtgtgagcaacatggctgtttattcgtCCGGGTGTGGACGGGCTGAGGCCGAACATGGAGTCAGCaaagggcggtgggataggagttgatTTTATAGGTTGTGGGGAAAGTTACAAaaaaggcagtggaaagttacaaaaGTTACTTTAGGGATGTTTTTTGAAAGTtgggagggggtcataggtttgcaagctgggagggggttgtaGGGTGTGGAGTCAAGGTCGGTTACAAAGTCCGCTGGCTTTGTCAATTGAGGcgggaataagaaacaatagaataaTGTCTCAGGGTAGTTATGCGCAGCAGGGGTTAGGCGTTGATGGTTTCTTACAGGGACTCACCGGGGTGTGCGTGCAGATCACAGAGGTGATCCTGCTGTTCATGGCCCGGCCTTAAACtttatgtaaaagaataaaatgaaatactaatttttttttt

Publications

PMID - Link Title
No publications available for this retrocopy