Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MRPS33P2
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr8). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr3:154550447-154551335  UCSC
Strand +
Parental Sequence XM_002751929.5
Parental seq. overlap 510 bp
Parental seq. overlap (%) 13%
Genomic Region Intragenic (TBC1D1)
Retrocopy Summary MRPS33P2, located on chr3:154550447-154551335, is a retrocopy of the parental gene MRPS33. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MRPS33
Full Name N/A
Also known as -
Coordinate chr8:104438437-104450588
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MRPS33P2
Chimpanzee Pan troglodytes MRPS33P3
Bonobo Pan paniscus MRPS33P3
Gorilla Gorilla gorilla MRPS33P2
Orangutan Pongo abelii MRPS33P2
Gibbon Nomascus leucogenys MRPS33P3
Green monkey Chlorocebus sabaeus MRPS33P2
Crab-eating macaque Macaca fascicularis MRPS33P2
Rhesus Macaca mulatta MRPS33P2
Baboon Papio anubis MRPS33P1
Golden snub-nosed monkey Rhinopithecus roxellana MRPS33P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MRPS33P2
GGCATGGGTGAGGAAAGTCAAGTCCAGGAACTGCAGCTCCTTGCCACTCAAGAAATGTCTTCTCTTTCAGAATATGCCTTGCGCATGTCTTGTCTCAGTGCTTGGCTATGTGGTGAAGTTGCCAGGCCTACTGATCCAAGTCTATGAAAGTGGTGACACTGTTTAGTGAACCACCCTTTGCCAAGAAGAAGGAGGCTTGTGACTGGGTATCCAGATGATAACACTTACTCTGCACTCACGAGGACACTCCAATTTCTTGGATTCTACAGAGATGAGCATCAGGATTTTAAGGATGAGCAAAGATGACTAAAGAAGATTCATGGAAAGGGGAAACCaaagaaaggagaggggaaaagaGCAGCAAAAAAGAGTgtggagtgttggtCCCTCAAGAGGGAAAATTTCTTCCTCTATggggcagagagaagaaaaggtatCTACTGTCTTTCCACATATTGGAGGAATGTCATTTCCCAAATGAAGGTTATATTGGGAGGTATCATCTCCTTGGTGATGTCTAATCCAGTTAAATGATGACTGGTTTCTTGAACACACTCTaactttgcaaaattattttggcCTTGG
>XM_002751929.5
CTAGGGCTCTGCTCTAGCCGCCAAGCTTCCGTTTCTCTACTGCTCCCCGTAGTAGTCGCCGGCGCGAGTTTGGCACCGGATAGGGGGCGGGTCTTCCGGGACAAGGACGCATGGGTGAGGAAGGTCAGGTTCAGGAACTCTAACTCCTTGCCACTCAAGAAATGTCCTCCCTTTCAGAATATGCCTTGCGCATGTCTCGTCTCAGTGCTCGGCTATTTGGTGAAGTCGCCAGGCCTACTGATTCCAAGTCTATGAAAGTGGTGAAACTGTTCAGTGAACTGCCCTTGGCCAAGAAGAAGGAGATTTACGATTGGTATCCAGATCACCACATTTACTCTGGACTCATGCGGACACTCCGACTTCTGGGACTCTACAGAGATGAGCATCAGgattttatggatgagcaaaaaCGACTAAAGAACCTTCGTGGAAAGGGGAAAccaaagaaaggagaagggaaaagagcaGCAAAAAAGAAGTAATGTTGGTCCCTCAAGAGGGAGAATTTCTTCCTcagtgacagagagaaaaagtGCATTTATTGTCTTTCCACATATTGGAGGAATGTCATCTTCCTAAATGAAGGTTATTTGGAGGAACACAGTCGTACCCTTGTTGAAATCTAATCCAGTTAAATTGTAGCTGGTTTCTTGAACACATTCTAACTGTGCAAAATTATTTTGGCCTTGGTCATGTTATGTGATGTTTACCTAGTTCtctaatgaaatgaataaataagttattGTTTGATGATCTGTTTGGGGTGAGGCAGGATGATGAGGAATGGAGGGGAAACTTATATTAAGTGAGCATCCTATggtgttcccatttctcccttCTTGCTTACTAACCCAGCCCTAAACTTCTTTCATCTCGGGCCCTTCAGCCACTGTCTCCACCACCAAGCTCACAAACTTTCAGTGCCCCTTTGCCTACTCCTCTGAGAAATCTATTAAGATGAATTTGTAGggtaaatatcttttaaaaggaAGTATTGTATACCTGCTCTATACAAGATACTGGTGCCCTGGTAATACAAGTGGTTAGCAAGAGAAATACTCCCTACCTCGTATAAGTTTCAGTCTTATGGGAGGGACTGAATTACATACAATTGTATGCACTACGTAATTACATATAATTGTATTACATGCTACAAAGGAAAAAGTCAGCCTTTGTAAgagcatggatggatggatggatgggtggatgggtggaggcagagggagatagCCAGCAGCCCAAACCACATTAGGGAATTTAAAGAAAGCTTCCCTAAAGAAATGATATTTAAGCTGAACCTTGAAGGATAAATAAGAGGTAGCCAAAAGGAAAATAGTGAGAAAGGTGTTTGAGGCAGAGAGTACCATTTCCAAAGCCCAAAGATATGAAGAAATTGTCTGTTCAAAGAATACTGacttgttggccaggtgcagtggctcatgcctgtaatccagcattttgggaggccaaggcaggtggatcacaaggtcaggagttggagaccagtctaaccaacatggtgaaaccccatctttactaaatatagaaaaattagccaggcatggtggcgcgtgcctggaatcccagctactcaggaggctgaggcaggagaaccacttgaacccgggagttggaggttgcagcgagctgagatcacgccactgcactccagcctcagtgacagagcgagactccatttaaaaataaaagaacactgaCCTGTTCGTGGTTGGCCATAAGAAAATAGAGGCCAGATCATGAAGGGCTTTGCAAATTCTGTGAAAAAGCTTGAACATAACCAGAagttatttctatgaaaaatgactgTTGTATAGATTTGAGTAGCTCACTGCTGATTTTATTGTGTTCCAGCAATGAGTTTCCAAAGAGATTGTGAGgccttctctgatttttttttttccaaaagttgTTCTGAATCTTTAGCATGTCCAGTAAATTTTTTAATAaccttttttattgtgataacaACATAAAATTAGTGATGTTAATCACATTTAAGTGTACGGTAGTGTCAACTATATGCATGTTATTGCACTCACGTACCTTTAACCCCTGTTTCTACTTCTCAGGTAAAGAATACAAAGTGCATAGGCAGGAGTTTGTATAGTATGTATGATTTCTAAGGTAGAAAGAATTCCAGTACCTATGTTTAAATGAATGTTACTTTAAAGATACCTAATCCAGATAGTATGCCTAGGGCCTATTTTATAGCctgttttttagaaaaaagaattaaactaaAATTGGGTGGTTTGTGTCTGATAGAAGTGAATTCCTAATAGCTTGATggtgtctaaaaaaaattaaatttaaaaagaagtgaatTCCAGCAGAAGGCttgagaattcattcattcagaactttttactgagcacctgctgtgtgcctgacacataataggtGTAGAGGATACAGAGACAAATAGACTTAGTCCCTAAGATTGTGTGAATGAGCATGTGTGTGTTACAGAGTATTGGCAAGATCACAGAAATATGCTTAGAAAAGTGCAGATGCACTGTTATTCTTGGCCAATGCAGCTGAGCCAGGTGTAGGTAGATGATTACCCCAGGATATTGGATTGAGAAACAAGCTCTCAGCCTGACCCCAGTGTAGCTAAGTAGACGTTTGAATTATGTGATCTCCAGCTTTTGGAAAAGATCTGAATGTAAGAGGAACTTAAGAGAATTCACATGATAATTTAGAGAGAATAGTGCATTACATTCTAACCGCAGACTTGAGTCAGAAAACAAAGAATCGATGTATTGGTTTGCCAATGAAAGAACTTCAGTGAGATCTCAGACCCTGACCCTGCAGTGAGCCTTAATAATGGTTGACAGGGAAGTTTGTAGATAACGCAGCAGTAGATCAGTGTGCCACTGCTCCAGGctgaaaatcagaaatgaaagctaaaatatatttgtacataaGCTATACCTTCAACTGATAGAGCAAGCTGTATGACTCAAAACAGCCTGTACAGAACTACGATGGACCAGCTAGAACATATTAATAGAAGATAAGGAACAGTTAACTCTTGAGAGCAGGGAAGTCAAATTTCAGGACACCAGTGAGCAAGGGTTAAGATGAAGACTAATCAGAAAAAATCTTTAACTCCAAGTTTAGACTAGCTAGTTTGTTTAATTGGATTTCTCTGGTCAAAACCTAAACTATTGGTGCTTTCTAAGGTTTGGGAATTAGTATGCATAGGCCATTTTGCCTTCTATTTCAGCATAACATATTAAAAAGACTGGGTTTTGGATTCAAAAGTATAGGTTTGTGACATAGTGTACTTACTGGTTATGTGACCTTAATTCAGTTACCTTCTTTGAAcctctttccttctctataaaatCATAGTACTTGATTAGATTCATGAAATAAGATATTTGTGAAAAGGACTCtgtaaattacaaaaagttaaaaacttagccgggcgcagtggctcaagcctgtaatcctagcactttgggaggctgaggtgggtggatcgcctgaggtcaggagttcaagaccagcctggccaacatggtaaaagcccaacttaaaaaaaaaagaagttaaaaacttTTACATACAGTGTACTGTGTGACTAGTAAGTACTGCTGTATCTTACTAGCACGATTTTCGTAGCAGCGTTGACAcatatctgctaaaaatataaagttcCCCACAGTTACAAGCAGCATGATAGGTTCAGGAAGAGGAGGTAGATGAGAGGTAACATCTTATTATTTACGTAATTTTGGGCTccagaagtttgtttttttaagcacCATATATGTTTGTGTTTCAAGACAAACATAAGGCAtcatatatttaaacataacCATAATGCTTGTATTTGTAAATCATCTTCCaagaaagaataaatcaaaatttGAAATTC

Publications

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