Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PPP3R1P1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr1:148091685-148092017  UCSC
Strand -
Parental Sequence NM_001270720.1
Parental seq. overlap 266 bp
Parental seq. overlap (%) 8.9%
Genomic Region Intergenic
Retrocopy Summary PPP3R1P1, located on chr1:148091685-148092017, is a retrocopy of the parental gene PPP3R1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PPP3R1
Full Name N/A
Also known as -
Coordinate chr14:42645396-42715513
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PPP3R1P1
Gorilla Gorilla gorilla PPP3R1P1
Orangutan Pongo abelii PPP3R1P1
Gibbon Nomascus leucogenys PPP3R1P1
Green monkey Chlorocebus sabaeus PPP3R1P1
Crab-eating macaque Macaca fascicularis PPP3R1P1
Rhesus Macaca mulatta PPP3R1P1
Baboon Papio anubis PPP3R1P1
Pig Sus scrofa PPP3R1P1
Cow Bos taurus PPP3R1P1
Sheep Ovis aries PPP3R1P1
Dolphin Tursiops truncatus PPP3R1P1
Horse Equus caballus PPP3R1P1
Dog Canis familiaris PPP3R1P1
Panda Ailuropoda melanoleuca PPP3R1P1
Cat Felis catus PPP3R1P1
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PPP3R1P1
ATGTGCTCCCACTTTGACAATGATGAAATCAAAAGGCTGGGCAGGAGCTTTAAGAAGTTGGACTTGGACAAATCAGGCTCTCTGAGCGTGCAGGAGTTCATGTCCCTGCCGGAGCTGCGCCACAACCCGTTGGTGCAGCGAGTGATCGACGTCTTCGACACCAACGGCAATGGAGAGGTGGACTTCAAGGAATTCATCCGGGGGATCTCCCAGTTCAGCGTCAAGAGCAACGAGGAGCAGAAGCTGAGGTTTGCGTTCAGCATTTACGACATGGATAAAGATGGCTACATTTCCAACGGGGAGCTCTTCCAGGTGCTGAAGATGATAGTGGGT
>NM_001270720.1
GGGTCAGCGCGAGCCACTGCAGTGAGTCCGTCACGGCTCCGGCGCGAGCGCGAGCCCAAGGCTGCAGCCCCCGAGGCGCCCGGCCTTTTTcgccccctctccccctcctttcttcctttctgcctctCCTGCTTGTCGCCGCCGCTCCTCCCGCGCTCTCTAGCTCTGAATCTCGACCttaatttatttccttctgcCCTGCCCGGTCCCTCGCGTGCCCAGTCACCCGGCCGGCGAGGGCCCCGCGGCGCCGCTTCCCCTCCCCCACGCGCGCCCCCTCCTCGCCGGCGACTCGAGGGCCGCAAGTGGGCCCCCGCCGCCGTCGCTTCCTGCGAGCCCGCCTGAGCGCGACACTTCTCCGAGCCAGCGAGCCGCCGAACCGCCGAGCAAAATGggAAATGAGGCAAGTTATCCTTTGGAAATGTGCTCACACTttGATGCGGATGAAATTAAAAGGCTAGGAAAGAGATTTAAGAAGCTTGATTTGGACAATTCTGGTTCTTTGAGTGTGGAAGAGTTTATGTCTCTGCCTGAGTTACAACAGAATCCTTTAGTACAGCGAGTAATAGATATATTCGACACAGATGGGAATGGAGAAGTAGACTTTAAAGAATTCATTGAGGGAGTCTCTCAGTTCAGTGTCAAAGGAGATAAGGAGCAGAAGTTGAGGTTTGCTTTCCGTATCTATGACATGGATAAAGATGGCTATATTTCCAATGGGGAACTCTTCCAGGTATTGAAGATGATGGTGGGAAACAATCTGAAAGATACACAGTTACAGCAAATTGTAGACAAAACCATAATAAATGCAGATAAGGATGGAGATGGAAGAATATCCTTTGAAGAATTCTGTGCTGTTGTAGGTGGCCTAGATATCCACAAAAAGATGGTGGTAGATGTGTGACTCCTATCAGAGAGTACCACCCAacacttttgctttcttctccatCTCTGAAGATCTGCTCAAGACGTCCAGCAATGCTCTCTGTGTATTTAAATGGAAGTATTTTTCTCTGTGAAGCCACATTTTCCACCATGAGCCTCATGAAGCCAACTAAGTGTTATTGAACTCTAATTCTCTCAATAACTCAGTGTAGCACTTTAAAGTCTGAAGGACAGCACCATGAAAAGAGCATATCAATGTggtggagaaagggaaggggttggctttttaatttatttttcttcatcttttataaCAAGAaagtatctatatatacatatgtaaatatttatatatagatatatgtagcTTTCTATATATGTAGTAGGTTGGCTTTAATTTAATATACTTgattcagaaacaaaacaatagaGTACAAAAGTGCCAAGCAGAACATAAAACGTCCTTACTTTTATTTCACACAGTTTTATATATAGATAGAAGACTGTATAATTGGAGCCGGGTGTGTAGGCCAgctattttccttttcctgtgcTTTCTCCTTTGAGATTGACAAAGCATTTGTTAACGTCCTACTATTTACCTTAATTACAATTTTGTAACAAAAGAGTCTGTAACTTTATTTATACTTATGAATATATTTCCAGGGACTACTTCTCATTGCTGAGCAGCTTTTAATACACCTCTGCTTGAGGAGAAAGTCTAGTTCATTGCTACTGCCAAGAGCTAGTTTCTGTGTTCATATAGTAACTGCACAGTGCTTATGGCTGCTTCATTCTGGTACTTTGTAACTAGAAGCCATTGCATTTATTAAATGTCCCTCAGTAATGTAAGTGCTAGTTGTGATTTTATACATAAAGGCCAGAAGCTGTCTGAGGCAATCATGATTTATTATATGTATCACTTACTGAAGAATACCTGAAGTGATCATGTAACTGCTTAGAATATCCTTTGTTTGATTACATGGGTAAATAATTTGTCATTAAACTTGTGTTTGAATCATGAATTTCCCTTCTGTGTTTCAAAAGACTTGCAGCTAATCTAAAAACTGGTGATATTTAATATGCATGTATCTAAATACCCATGTTTTTGGTTTAAATGTGAGAAATCTTGCTAATCTATATGCCACAGAAGAGCAAAATTTTATCCAAATTTATACCTCTTAAAATTTCTTTACCATGAGGGATAGAGAATGCatgatggttttttaaatttgCCCATGTAGTTGATAATGGATGCTAACTTAATAAATTTGTGTGATATAAAAGTAGTATATCATGTTCTACCATTTGATCTTATTCCTTCCCTTTTCTGCAAAGGTACTATTGgcttgaagaaaaatattttggttagCTTTTTATGACAGTAGTctttccctttataatttttctataaaaactgGTTTTAAAATCAGTGGAAAAGGGCAGGTTGAATCAAGGTGACTGAATCTGAAATTGAGCACACCTGCCTGCCATCGCTGTTCCTTCAACTGAGTGCTGCACATCATGGGCTCTGTCTGTGAGAGAAAAATCCCGGTGCTTGGTGTCCTTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAACTCTTGTTTACATaatttgcataattttaaaagataaagttgCCAAACTTTGGAAATGTTAATGTCCATTCAGACTGAAAATCTCCACTACATGTAACTTTCTTCCTCTGGATCAGTGGCATggcttataatcccagccagTGGTTTGAACTGTTCCAGTGTCAACTGCCATGTGCTCTGCTTCAAGGGGGAACTAGtcttttgtgaattttttgtACATAAGTatttgttacaaatattttagcAAATGCTTTCTATTTCTCTTGCTTGTGCATATCTTGGCTGGCgttaaaaaaaatagtgcaaCATTATTTCCTTACCGGGGAATGAGGgttcttcttcttattctttcttttctttttagtttgtgtgtgggggtgggcaAGGGAGGGAGCAGTTTATGTTCaatgtttagtttttcttctgcATGATACGTCATGTTGTGGGATCTTTAGAAAACTTCATActgtatgaataaaataaaatatttgaaacttg

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