Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name RNFT1P2
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr14:92048924-92049687  UCSC
Strand +
Parental Sequence XM_008996967.3
Parental seq. overlap 630 bp
Parental seq. overlap (%) 28.3%
Genomic Region Intragenic (WDR35)
Retrocopy Summary RNFT1P2, located on chr14:92048924-92049687, is a retrocopy of the parental gene RNFT1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RNFT1
Full Name N/A
Also known as -
Coordinate chr5:93355859-93368772
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RNFT1P1
Chimpanzee Pan troglodytes RNFT1P1
Bonobo Pan paniscus RNFT1P1
Gorilla Gorilla gorilla RNFT1P1
Orangutan Pongo abelii RNFT1P1
Green monkey Chlorocebus sabaeus RNFT1P1
Rhesus Macaca mulatta RNFT1P1
Baboon Papio anubis RNFT1P1
Golden snub-nosed monkey Rhinopithecus roxellana RNFT1P2
Dolphin Tursiops truncatus RNFT1P3
Greater horseshoe bat Rhinolophus ferrumequinum RNFT1P3
Sloth Choloepus didactylus RNFT1P6
Gibbon Nomascus leucogenys Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RNFT1P2
TGTTGCAAAACAgtcttctttatattttgattCTAGTTTTCAAGCTTATTGTGCAGCACGTAACAGGAATTTCTTTTGATATTGGGCTGCTGACAACTTCTGTGAATGCAAACAAAAGCATTGTCAGTCATGCTTTTCTAAGAGAAAGGCTCTTAGAGATTTAGTGTGCTTGGTTACTGGTGTGATTAGCAGGGTCTTCTGTTCTTCTATATCATACCTTCTACTTTCAGTCGCTTTATTACACCTTAATCTTTTAAAAGACTTCTTTGGACTTTTTGATGTTCTTTGGGTTATTGGAATAGCTGATTTCATTCTGAAATTCCTTTACATGAGtttaaaatgcattatatttTGGTATCCTCTTTCAACAGGCCTTTTAAATCCAAGGGTTACTGGTATGTGCTTTTAGAAGATTTATGTCAGTATTACCAGATTTTTGTTCACATACCAGTTTGGTTTCATTACCTTATTGGCTGTCTGGAGTCTAGTAATGTAACGAATGGAATCTTGGGATATTATTGCTGGCTTTACTCTACATCATTTAAATCTTTTGGCTTTTTTATAGACATCTGAGAACTTTCAGGTGGGTTTTATGAATATTTTGTACAAGATCAAGTTATGGAGTTGCTGCCAACAAGAGACCTTTTCAGATGTGGATGATATTTGTTCAGTACATCAAACTGAATTTCAAAGCCTGTTCTTAACTGTCAGCATGTATTTTGTCAAGAGTGCCCTACCTTACAGTCCAACAGAGAGAAAACATG
>XM_008996967.3
ACACACCGCAGCCGCCGCAAGCCCTTCTCGGCGCGGCGcgggggctgggctgggaggcagagcGGGGGCAGGGCGCGCGCTCGTGAGAACGTCCGGGGAGCGCGCGCGCCGACGCCGAAGCCGCCGGGCCGAGCAGAGTCGGAGTTGTTGCCTGTGGGGTTTGCGGTTGATGGCTCCCGCTGACGGGCTGGCGGCGGCGTCTGCCGCTGTTCCTGCTGTTGCTGCCGAGACCTCCGTTCGCTTCTGGTCATGAGAGGAGACAGTCCTGAAGCAAAGATATTTGGGTCAGAGAAAAAGTAGTTAAGGGCCATGCAAGCCAATCGTAGCCAACTACACAGTCCTCCAGGAACTGGAAGCAGTGAGGATGCCTCAACCCCTCCGTGTGTCCACACAAGATTGACAGGAGAAGGCTCTTGTCTTCATTCTGGAGATGTTCATATCCAGATAAACTCTATACCTAAAGAAAGTACAGAAAATCCAAGCTCCAGAAATACAAGATCAGGCGTCCACAGCTGCGCCCATGGATGTGCACACAGTCGCTTACGGAGTCATTCCCACAGTGAAGCAAGGCTGCCTGATGTTACTGCCACAGAGTCTGGAGATCATGGTAGTAGCTCCTTCTCAGAACTCCGCTATCTCTTCAAGTGGTTGCAAAAAAGTCTTCCATATATTTTGATTCTGAGTGTCAAACTTGTTATGCAGCATATAACAGGAATTTCTCTTGGAATTGGGCTGCTAACAACTTTTATGTATGCAAACAAAAGCATTGTAAATCAGGTTTTTCTAAGAgaaaaatcCTCAAAGATTCAGTGTGCTTGGTTACTGGTATTCTTAGCAGGATCTTCTGTTCTTTTATATTACACGTTTCATTCTCAATCACTTTATTACAGtttaatttttttaaatcctactTTGGACCATTTGAGCTTCTGGGAAGTACTTTGgattgttggaattacagacttcattctgaaattcttttttatgggcttaaaatgccttattttattgGTGCCTTCTTTCATCATGCCTTTTAAATCTAAGggTTACTGGTATATGCTTTTAGAAGAATTATGTCAATACTACCGAACTTTTGTTCCCATGCCAGTTTGGTTTCGCTACCTTATAAGCTATGGGGAGTTTGATAATGTAACTAGATGGAGTCTTGGGATATTGCTGGCTTTACTCTACCTCATACTAAAACTTTTGGAATTTTTTGGGCATCTGAGAACTTTCAGACAGGTTTTACGAATTTTTTTTACACGACCAAGTTACGGAGTGACTGCCAGCAAGAGACAGTGTTCAGATGTGGATGATATTTGTTCAATATGTCAAGCTGAATTTCAGAAGCCAATTCTTCTCATCTGTcagCATATATTTTGTGAAGAGTGCATTACCTTATGGTTTAACAGAGAGAAAACATGTCCACTGTGCAGAACTGTGATTTCAGAtcatataaacaaatggaaagatggaGCCACTTCATCACACCTTCAAATATATTAAGTTGTATAAACTATTAAGGCCACAAAATACTAATTAATGTCATTTGGTCATAATGACTATTGATTAAGGCATCAAAATGGATTTTCAGGGCtacaagaaaaatgtttctagatGGTTTTAGAATGTAAGACTTACGGTCCATTTCATCaaaagattaaatgaaagaaccctatgttttaaaatatgtataatgttCAACCTACTGTGTatgcaacatttattttaattatttgacagGTAACTGCAGTGTTAAAttgtaaatgtgttttcttaATGTTAACAAAACCACAATTTGTAGAATTGGTGGTTTTAGAGAACTCAGGTATTCCTTCCTGACATTGTTTtcagaataaagaatatttttcataatattttaagatacatatcagaaataattttgttCAGCATTGACTTTTATAATTCCCATcctaaaaattcttaatattttcataaaatttgtatttttaaatgaaagttctaaatgttgtattttatcaTTAACAGATTTTTCTAAGTTTACTGAAgatgatacattttaatattgtattattCTCTGTAGTATGACCAGAAtcagtgaaaataaattatttaaattcattttgtctATGGACCTCATAAATTCTTCTGTCATCAGCTTTAATGTTCATGATCATGCTTTTTGTATAGAACCATGGAGTATCTTGAagtaactattaaaataattcatgtgGATT

Publications

PMID - Link Title