Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL31P57
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr14). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr11:63970871-63971097  UCSC
Strand -
Parental Sequence XM_035271777.1
Parental seq. overlap 198 bp
Parental seq. overlap (%) 42.6%
Genomic Region Intragenic (XRRA1)
Retrocopy Summary RPL31P57, located on chr11:63970871-63971097, is a retrocopy of the parental gene RPL31. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL31
Full Name N/A
Also known as -
Coordinate chr14:7901949-7906166
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL31P85
Chimpanzee Pan troglodytes RPL31P36
Bonobo Pan paniscus RPL31P35
Gorilla Gorilla gorilla RPL31P39
Orangutan Pongo abelii RPL31P38
Gibbon Nomascus leucogenys RPL31P43
Green monkey Chlorocebus sabaeus RPL31P2
Crab-eating macaque Macaca fascicularis RPL31P59
Rhesus Macaca mulatta RPL31P59
Baboon Papio anubis RPL31P52
Golden snub-nosed monkey Rhinopithecus roxellana RPL31P55
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL31P57
agggccaTTCTGCCATCAACCAGATAGTGACCTGAGAATACACCATCGACGTTCATAAGCACATCCATGGAGTGGGCTTCAAGAAGCATGCCCCTCAGGCACCCAGACAGATTCAGAAGTTTGCTATGAAGGAGATGGGAACTCCAGATGTGCACATTGATACCAGGCTCAGCAAAGCTGTCTAGGCCAAAGAAATAAGGAATGTTCCATACCTAATCCa
>XM_035271777.1
TCCTCGCGCTCTTTCTTTCCGCCTCGGACCGGACAGAGTGAATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGCCATCAACGAGGTGGTGACCCGAGAATACACCATCAACATTCACAAGCGCATCCATGGAGTGGGCTTCAAGAAGCGTGCCCCTCGGGCACTCAAAGAGATTCGGAAGTTTGCTATGAAGGAGATGGGAACTCCAGATGTGCGCATTGATACCAGGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTCCCATACCGAATCCGTGTGCGGTTGTCCAGAAAACGTAATGAGGATGAAGATTCACCAAATAAGCTCTATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACAGTCAATGTGGATGAGAACTAATCGCTGATCGTCAAATACatcaaataaactttaaaaattgccttta

Publications

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