Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL32P50
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr15). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr16:39435539-39436035  UCSC
Strand -
Parental Sequence XM_003734893.5
Parental seq. overlap 419 bp
Parental seq. overlap (%) 65.7%
Genomic Region Intergenic
Retrocopy Summary RPL32P50, located on chr16:39435539-39436035, is a retrocopy of the parental gene RPL32. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL32
Full Name N/A
Also known as -
Coordinate chr15:64467741-64473630
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL32P4
Chimpanzee Pan troglodytes RPL32P17
Bonobo Pan paniscus RPL32P17
Gorilla Gorilla gorilla RPL32P22
Orangutan Pongo abelii RPL32P21
Gibbon Nomascus leucogenys RPL32P27
Green monkey Chlorocebus sabaeus RPL32P9
Crab-eating macaque Macaca fascicularis RPL32P21
Rhesus Macaca mulatta RPL32P22
Baboon Papio anubis RPL32P20
Golden snub-nosed monkey Rhinopithecus roxellana RPL32P22
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL32P50
TTCCTCAGCACTGCCTATGGAGATGGCAGCCATCTTCTCTGTGGCATCATGGCCGTCCTCAGGTCCCTCGTGAAGCCCAAGATTGTCAAAAGAGAACCGAGAAGTCCATCGGGCACCAGTCAGACCCACATGTCAAAATTAAGTGTAACTGACGGGAAACCCAGAGGCATTGACAATATGGTTTGTAGAAACTTCAAGGCCCAGATCTTGATGCCCAACACTGGTTATGAGAGCAAAAACGACAGCAACAACAGAAGCACATACTGCTGCCTATGGCTTCGGGAAGTTCCTGGTCCACAATGTCAAGGAGCTGGAAGTGCAGCTGATGTACAACAGATCTTGCTGTGCTGAGATCACTCACAATGTTTTATTCCAGAACTGAAAAGCCACGTGGAAAGAGCCACTCCCCGGGCCATCAGAGTCACCAACCCCAATGCCAGGTTGTGcggcaaagaaaataaagagacagCACACGTGCACGTTTTGTGTTTCAATAC
>XM_003734893.5
GAGGCACCTTTTATGTGTCTTTGAAAGAGCCGGAGCCGGAAGTGGTCGCCTTTTCCCTGCCAGGACCTAGGGGGTTACGTCCCATCAGCCATTGCGCACCAGCGTCCCTTCTTTTCCTCGGCGCTGCCTACGGAGATAGCAGCCGTCTCTTGGTCGGCATCATGGCCGCCCTTAGACCCCTTGTGAAACCCAAGATCGTCAAAAAGAGAACCAAGAAGTTCATCCGGCACCAGTCAGACCGATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGTATTGACAACAGGGTTCGTAGAAGGTTCAAGGGCCAGATCTTAATGCCTAACATTGGTTATGGGAGCAATAAGAAGACAAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTCCACAACGTCAAGGAGCTGGAAGTGCTGCTGATGTGCAACAAATCTTACTGTGCTGAGATCGCTCACAATGTTTCCTCCAAGAACCGCAAAGCCATCGTGGAAAGAGCTGCCCAGCTGGCCATCAGAGTCACCAACCCCAATGCCAGGCTGCgcagtgaagaaaatgaatagacaGCTTATGTGCAcgttttgtgtttaaataaaactgCCATCTTCCTTAATTTTAA

Publications

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