Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPL38P1
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr3:140504251-140504468  UCSC
Strand +
Parental Sequence XM_008997694.2
Parental seq. overlap 191 bp
Parental seq. overlap (%) 34.8%
Genomic Region Intergenic
Retrocopy Summary RPL38P1, located on chr3:140504251-140504468, is a retrocopy of the parental gene RPL38. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPL38
Full Name N/A
Also known as -
Coordinate chr5:128990437-128993778
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPL38P3
Chimpanzee Pan troglodytes RPL38P7
Bonobo Pan paniscus RPL38P6
Gorilla Gorilla gorilla RPL38P7
Orangutan Pongo abelii RPL38P6
Gibbon Nomascus leucogenys LOC100605420P5
Green monkey Chlorocebus sabaeus RPL38P2
Crab-eating macaque Macaca fascicularis RPL38P5
Rhesus Macaca mulatta RPL38P5
Baboon Papio anubis RPL38P4
Golden snub-nosed monkey Rhinopithecus roxellana RPL38P4
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPL38P1
CCATGCCTCAGAAAATTGAGGAAATCAAGGATTTTCTGCTCATAGCCTGGTGATAGGATGCCAAATCTGTCAGgatcaagaaaaataaggaaaacgtGAAGTTAAAAGTTCCATGCAGCAGATTCATTTATACTCTGATTATCACTGacaaagagaaggcagagaaactGAACTAGTCCCTGACCCCTGGCTTGGCAGTGAAGGAGCTAAAATGAACC
>XM_008997694.2
CCACGCGCATAGGTCCAACGAAAGCCGTGGAGAATAAGCGTTAGCTCTTCAGACTGAATCTGAGCTAAAATCTAGCGAAGCCAGGCTGGGGTTTGGGAGGCTGCGGGGGAAGACAGGAATGGGCACCGTATCCAGTTTCCTCCGTTGGTGGGGAGGGTTTAATTGCCCGGAAACGGAAGTCTcgttctttttcctcctcttcctcggTTATTGCTATCTGTGAGCGTCTGTAGGGTGGTACGCCGGTGAGAAGGTTCCGGTGCGCGCCCGTTCCCAGCGCGTCTCGTCATCATGCCTCGGAAAATTGAGGAAATCAAGGACTTTCTGCTCACAGCCCGACGAAAAGATGCCAAATCCGTCAAGATCAAGAAAAATAAGGACAATGTGAAGTTTAAAGTTCGATGCAGCAGATACCTTTATACCCTGGTCATCACTGACAAGGAGAAGGCAGAGAAACTGAAGCAGTCCCTGCCCCCTGGTTTGGCAGTGAAGGAACTGAAATGAACCAAAACACTGATTTGACctatattaaaatactaaaaatcctAA

Publications

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