Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPSAP7
Plot displaying the genomic locations of a retrocopy (in chr3) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr3:116494317-116495240  UCSC
Strand -
Parental Sequence XM_017965964.2
Parental seq. overlap 824 bp
Parental seq. overlap (%) 70.5%
Genomic Region Intergenic
Retrocopy Summary RPSAP7, located on chr3:116494317-116495240, is a retrocopy of the parental gene RPSA. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPSA
Full Name N/A
Also known as -
Coordinate chr17:70506604-70513172
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPSAP39
Chimpanzee Pan troglodytes RPSAP22
Bonobo Pan paniscus RPSAP23
Gorilla Gorilla gorilla RPSAP22
Orangutan Pongo abelii RPSAP26
Gibbon Nomascus leucogenys RPSAP26
Rhesus Macaca mulatta RPSAP27
Baboon Papio anubis RPSAP10
Golden snub-nosed monkey Rhinopithecus roxellana RPSAP9
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPSAP7
TTGTTGTGGATTCCCATTGTAACTTAAAGGGAAACTTTCACAATGTTCAAAGCTCTTGATACCCTGCAAATGAAGAAGGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCCACTTAGGTGTCACCAATCTTGACTTGCAAATGAAACAGTACATCTATAAAAGGAAAGTGATGGCATCTACATCATAAATCTGAAGATGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCTGCTGATGTCAGTATTATATCCTCCAGGAATACCGACCAGAGGGCCGTGCCGAAGTTTGCTGCTGCCACTGGAGCCATTCCAATTGCTGGCCATTTCACTCCTGGAACCTTCGCTAACCAGATTCAGTCAGCATTCTGAGAGTCACAGCTTCTTGTGGTTACTGACCCTAGAGCTAACTACGAGCCTTTCATGGAGGCATCTTATGTTAACCTACCTACCATTGCTCTGTGTAATACAGATTCTCCTCTGCTCTGTGTGGACATTGCCATTCCATGCAACAAGGGAGCTCACTCAGTGGGTTCAATGTGGTGTATACGGCCCGAAGTTCTGCCCATGCGTGGCATTTCCTGTGAACACCTGTGGGAAGTCATGCCTGATCTCTACTTCTATAGAGATcctgaaaagatggaaaaagaagagcaggctgCTGCTTAAAACGTTATGACCAAGGAGGAATTTCAGAGTGAATGGACTCCTCCAATTCTTGAGTTCACTGTTACTCAGTCTGAGGTTACAGACTGGTCTGAAGGTGTGCAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGAGATCAGAGTGCTCACTCAGCCTGCCACAGAagactggtctgcagctcccactgcTCAGGCCACTGAATGGGTAGAAGCAACCACTGAATGGCCTTAAA
>XM_017965964.2
CTGACAACGGAGTATATAATAACGTCACTTCCTGCGGCCTGTCCTTTCCGCGCTACCTGCCGAGGGCTCCAAACGGCGTTGTTCTGGattcccGTCGTAACTTAAAGGGAAACTTTCACGATGTCCGGAGCCCTCGATGTCCTGCAAATGAAGGAGGAGGATGTCCTTAAGTTCCTGGCAGCAGGAACCCACTTAGGTGGCACCAACCTTGACTTCCAGATGGAGCAGTatatctataaaaggaaaagtgatgGCATCTACATCATAAATCTGAAGAGGACCTGGGAGAAGCTTCTCCTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCTGCTGATGTCAGTGTTATATCTTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCAATTGCTGGCCGCTTTACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCGGGAGCCACGGCTGCTTGTGGTCACTGACCCAAGGGCTGACCACCAGCCTCTCACGGAGGCGTCTTATGTCAACCTACCTACCATTGCTCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATCCCATGCAACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTTTGCGCATGCGTGGCACCATTTCCCGTGAACACCCGTGGGAGGTCATGCCTGATCTCTACTTCTACAGAGATCCTGAAGAGattgaaaaagaagagcaggctgCTGCTGAGAAGGCTGTGACCAAGGAGGAATTTCAGGGCGAATGGActgctccagctcctgagttcaCTGCTACTCAGCCTGAGGTTGCCGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCCATCCAGCAGTTCCCTACTGAAGACTGGAGCGCCCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCTACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGAATGGTCTTAAGCTGTTCTTGTGTGGCCTCTTAAACGACATGTAAGattcatggaaaataaacatcgAGTTTCTAAAAGTTgtgatttattttggttttttattccagatcagaatagctgggatttcatATCAAAGTATAACAATAAATACATGTCTTGACATGAA

Publications

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