Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RTRAFP3
Plot displaying the genomic locations of a retrocopy (in chr14) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr14:19608063-19608984  UCSC
Strand +
Parental Sequence XM_002753902.5
Parental seq. overlap 843 bp
Parental seq. overlap (%) 67%
Genomic Region Intragenic (MERTK)
Retrocopy Summary RTRAFP3, located on chr14:19608063-19608984, is a retrocopy of the parental gene RTRAF. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RTRAF
Full Name N/A
Also known as C10H14orf166
Coordinate chr10:83103279-83119673
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RTRAFP1
Chimpanzee Pan troglodytes RTRAFP1
Bonobo Pan paniscus RTRAFP1
Gorilla Gorilla gorilla RTRAFP1
Orangutan Pongo abelii RTRAFP1
Gibbon Nomascus leucogenys RTRAFP2
Green monkey Chlorocebus sabaeus C24H14orf166P2
Crab-eating macaque Macaca fascicularis C7H14orf166P2
Rhesus Macaca mulatta RTRAFP2
Baboon Papio anubis RTRAFP2
Golden snub-nosed monkey Rhinopithecus roxellana RTRAFP2
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RTRAFP3
AGAGCCAGAAGCGGGGACCATGTTCTGACGCAAGCTGACGGCTCTCGATTACCGCAACCCGCCGGCTTCAACTGCAAAAATGAAACGGAATttagaaacttcatttttttgGCTTCAAGACCAGAAAATTAGACACTACAAGACTGAAGACAGAGGTAATTTAAGAAACGTCCACAGCAGTGACTGCCTCAAGTTCTTTGAAAAGTATCTCAGAGATGTTAACTGTCCTTTATTCAAGATTGACAACAAGCTATTGACTGGCTTCTTGGTTTACCTATTAGACTTGAATATGGAAATAACTCTGAAAAATACAAGGAATTAGTATCTGATAGTGCAAAAACTGCTGACAATGCAACTAATATGCAGAACCATTGATCAATTTGGATGTAAATAATCCTGATTTTAAGCCTGGTATGATGGCTTTGACTAACCTGCTTCAGATTCAACGTCATGATGATTACCTGCTAATGCTTAAGGCAATTCGAATTTTGGTTTAGGAGTGCCTGACACACAATGCAGTTGCTGAGGCAAATCAAACAAAAGAAGGCTTGCCTGTTGTTTTAGACAAACATGCTCTTGGTTTTGACACAGGAGATGCAGTTCTTAATGAAGCTGCTCAAATTCTGTGATTACTGCATATAGAGGAGCTCAGAAAGCTACAGACAAAAATTAATGAAGCCATAGTAGCTGTTCAGACAATTATTGCTGATCCAAGGACAGAGCACAGACTTGGAAAAGCTGGAAGATAACACTTTCGGACTTCAGCTTCTCACCTATTTAGTACAATTGGGAACCATGTAGACTTCTGGCATGTTTGGAAATTAATGTCACATTCTCGGGGGAGGGATCCCAGAAAATTGAATATGTTCTAGAGATTTGCCaccattacttttttctttaatgaagttttagaaagtagaa
>XM_002753902.5
CCTACATATACTATTCTCTGTACGTTacagcaagaaagaaaggaaagcggCTTCCCAGGGGTTTTCTGCCTATTGTACAACCAGGAAGCTGACAATAAAGTTTGTTTGAGCGTCGACGTCCGCCGACGTGGCCCCGCCTCTTCAGCTGGAGCCGCGATTGGTAGGCATTTGCCGGCGGCCGCCGCTCTTAAGCCACGATTGGCGAAGGCCGCCGTCATTTTCAGAGCGTCCCAGCGCCAGCCCGCCCTCTCGCCGCGTCGCCGGTGCCTGCGCCGCCCGCTCCACCTCGCTTCTCCTCTCCCGGCCGAGGCCCGGGGGTCAGAGCGAGAAGCGGGGACCATGTTCCGACGCAAGCTGACGGCTCTGGACTACCACAACCCCTCTGGCTTCAACTGCAAAGatgAAACAGAATTTAGAAACTTCATTGTTTGGCTTGAAGACCAGAAAATCAGACACTACAAGATTGAAGACAGAGGTAATTTAAGAAACATCCACAGCAGTGATTGGCCCAAGTTCTTTGAAAAGTATCTCAGAGATGTTAACTGTCCTTTCAAGATTCAAGAGCGACAAGAAGCCATTGACTGGCTTCTTGGTTTAGCTGTTAGACTTGAATACGGAGATAATGCTGAAAAATACAAGGACTTAGTACCTGATAATGCAAAAACTGCTGACAATGCAACTAAAAATGCAGAACCATTGATCAATTTGGATGTAAATAATCCTGATTTTAAGGCTGGTGTGATGGCTTTGGCTAACCTGCTTCAGATTCAACGTCATGATGATTACCTGGTAATGCTTAAGGCAATTCGAATTTTGGTTCAGGAGCGCCTGACACAGGATGCAGTTGCTAAGGCAAATCAAACAAAAGAGggCTTGCCTGTTGCTTTAGACAAACATATTCTTGGTTTTGACACGGGGGATGCAGTTCTTAATGAAGCTGCTCAAATTCTGCGATTGCTGCATATAGAAGAGCTCAGAGAGCTACAGacaaaaatcaatgaagccaTAGTAGCTGTTCAGGCAATTATTGCTGATCCAAAGACAGACCACAGACTGGGAAAAGTTGGAAGATGAACGCTTCAGAACTTCTCCTTCTCACCTACTTAGTACAGTTGGGAACCACGTACACTTCTGGCATGTTTGGAAATCAAAATGTCACATTCTCGGGGGAGGAAGCCCAGAAAATTGGGTATGTGCTAGAGATTTACCaccattgcttttttctttaataaagtttaggaaagtagaatttttatta

Publications

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