Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS10P20
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr10:28995086-28995523  UCSC
Strand +
Parental Sequence NM_001193579.1
Parental seq. overlap 394 bp
Parental seq. overlap (%) 69.4%
Genomic Region Intergenic
Retrocopy Summary RPS10P20, located on chr10:28995086-28995523, is a retrocopy of the parental gene RPS10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS10
Full Name N/A
Also known as -
Coordinate chr4:135060939-135069392
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS10P53
Chimpanzee Pan troglodytes LOC104001113P31
Bonobo Pan paniscus RPS10P35
Gorilla Gorilla gorilla LOC109025084P32
Orangutan Pongo abelii LOC100439704P31
Gibbon Nomascus leucogenys RPS10P11
Green monkey Chlorocebus sabaeus RPS10P23
Crab-eating macaque Macaca fascicularis RPS10P17
Baboon Papio anubis RPS10P26
Golden snub-nosed monkey Rhinopithecus roxellana RPS10P26
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS10P20
TGTGCTCAACGTTCATGTCATGAAGGCCATGCAGTCTTTCAAGTCCGGAGGCTACTACATGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTATCAATGAGGGTATCCAGTATCTTCGTGATTATCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACACTGCAGCCGTCCAGGGACTGGCAGGCCTAGTCCTAAAGGTCTGGAGGGTGAGCGACCTGCAAGACTCACAAGAGGGGAAGCCGACAGAGATACATACAGAGGGAGTGCTGTGCCTCCTGGTGCTGACAAGAAAGCCCAGGCTGGGACTGGGTCAACAACCGAATTCCAGTTTACAGGCGGATTTGGTCGTGGACGCAGTCAGCCACCTCAGTAAAATTGAAAAGGATTATTTTGCATTGAATAAACTTACAGTC
>NM_001193579.1
CCTGCAGCCGCCGAGATGTTGATGCCTAAGAAGAACCGGATTGCTATTTACGAACTCCTTTTTAAGGAGGGAGTCATGGTGGCCAAGAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCAGACAAGAATGTACCCAACCTTCATGTCATGAAGGCCATGCAGTCTCTCAAGTCCCGAGGCTACGTGAAGGAACAGTTTGCCTGGAGACATTTCTACTGGTACCTTACCAATGAGGGTATCCAGTATCTCCGTGATTACCTTCATCTGCCCCCGGAGATTGTGCCTGCCACCCTACGCCGTAGCCGTCCAGAGACTGGCAGGCCTCGGCCTAAAGGTCTGGAGGGTGAGCGACCTGCGAGACTCACAAGAGGGGAAGCTGACAGAGATACCTACAGACGGAGTGCTGTGCCACCTGGTGCTGACAAGAAAGCCGAGGCTGGGGCTGGGTCAGCAACCGAATTCCAGTTTAGAGGCGGATTTGGTCGTGGACGTGGTCAGCCACCTCAGTAAAATTGAAGAGGATTATTTTGCATTGAATAAACTTACAGCCAAAAAACCTTAA

Publications

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