Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name MKRN1P3
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr10:81666587-81669321  UCSC
Strand -
Parental Sequence XM_015135050.2
Parental seq. overlap 2063 bp
Parental seq. overlap (%) 65.2%
Genomic Region Intragenic (ZNF334)
Retrocopy Summary MKRN1P3, located on chr10:81666587-81669321, is a retrocopy of the parental gene MKRN1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name MKRN1
Full Name makorin ring finger protein 1
Also known as -
Coordinate chr3:166872513-166893235
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens MKRN7P
Chimpanzee Pan troglodytes MKRN1P7
Bonobo Pan paniscus MKRN1P7
Gorilla Gorilla gorilla MKRN1P7
Orangutan Pongo abelii MKRN1P8
Gibbon Nomascus leucogenys MKRN1P3
Green monkey Chlorocebus sabaeus MKRN1P1
Crab-eating macaque Macaca fascicularis MKRN1P3
Baboon Papio anubis MKRN1P4
Golden snub-nosed monkey Rhinopithecus roxellana MKRN1P7
Marmoset Callithrix jacchus MKRN1P1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>MKRN1P3
CGGCTGAACTGAACAGGTCACCTACTGGTATTTTGTGCATGGGATTTGTAAGGAAGGAGATAACTGTCGCTACTTGCACTCCCTCTCTGACAGTCCACATGGCGTAGTGGGCACGTATTTTCAGCCAGGGTGCTGTGTTTATGGAGGCCGCTGCAGACGTGAACTCAGCAAGCCACTGAAACGGAAAGAAGCAACTGCTACAGATCTAACTACAAAATCATCCCTTGCTGCTTCCTCAAGTCTCTCGTTCATAGTTGGACCGCTTGTTGAAACGAATACAGGCGAAGCTGAGTCCAATTCAAACTTTGCAACTGTAGGAGTGTGTTCAGAGGACTGGTGGATGCTGTTCAGTTTGTTCCCAGGCAACTCTACTGCAGCCATGCTGCCTCTTTCTGCAGTGACCAAGGGAGAATCAGAGAAAGAGCAAACAGCTGTGATAACAAAGAAGCCGCTTTGCCCCTAGGCTGCAGTGGGAGAGATGGAAATGGGTAGAACTGTGTGTGTCTCCACAGAGAGTCATGTGATCATGTAAGCTGCAGGTCCTACCTCCAATGGATGCTGCCCAGAGACCACAGCATGTAAAAATCTTGCTCTGAGGCCCATGAGAAGGAAACAGAGCTCTCACTGGCTGTGCAGTGCAGCAAGGATATGGTGTGTGGGATCTGCATGAAGGTGGCCTGTGAGAAAGCCAGCACCGGTGAGCGTGGCTTTGGGATCCTCTCCAGCTGCAGCCACACCTACTGTCTCAAGTGTATTCACAAGTGGAAGGGCACTAAGCTATTTGAGAGCAAGATCATAGTGTCCTACCCAGAATACTGGATCACATCTAACTTTGTCATTCCCAGTGAGCACCGGGTGGGAGAAAGAAGAGAAGCAGAAACTCATCCAGAAAGTTAAGGAGGCAATGAGCAGCCAGGCGTGCAGGGATTTTGATGAAGGACGGGGGAGCTGCCTATCTTGGGGGATGTGTTTTTACAAGCAGGTATTCCCTGATGGCCATAGAAAGGATACACAGAGACAGGCAAGCAGATACTGGGCCCAGTGAAGGAACCACTTCTAGGAGTTCATTGAGGAAAGAGAGAACAATGACCCCTTTGACAACAATGAAGAAGAGGTTGTCACCTTTGAGCTGGGTGAGATGTTGCTTATGCTCGTGGCAGATGGGGACGATGAACTGACAGACTTTGAAAATGAGTGGGACTTGTTCCATGTTGATTTGGAAGATTTTTATGACTTGGCTCAATAGCCACCTTGCGTGGCATGTGGACTGGCCTGCTGACCTCAGCAGCAGTCCCCTGTGGCAGTGTGACAGTGCCCGTGTTTCTCTCCTAGGCAGGCCTATCAACTTCAGGTGCTGTCTTAATTTTTACCCAGGGCCTGTCTTCTCAATCTGTGACCTTTCCCCAAGAGGTGTGTTACTTTCTCTGTGGAAAAAAGATTCAAAAATAAATCCTGAAGTTAGTGTTTTGTAACATGAATTTAACAGTCAGACAGTTCATGTAGGTGTGTTGTGTCATCTGTTTTCAACCAGATTGTATTTATGGACTCCACACGCTCGTTTTGAGGACCCTAGGTTCAAAAGCAAAAGCTGTGGCCCTGCTTTCTGGTCCAAGGATAGGAGCGATGGCTGAAGGGATGTGCGCTTGTAAAGAGTCTTCTGCTCCAACACAGGGTGTGGATCCTTGAGTTTTCTGCTGAAATCTGCACATCTGTGTTTTTATATCTGTTCCCTACCCTGTGATTCCCACCCTGTCCACTTGCTCTGTGATTTTGGTCTCTTGCTTAATTGTACACAAGTAATACTACTGGGTCACCAGAACGAGGTGCGAATGTGTTGAGATTTCTATTATGTGtCTACCATGTTTTGTATGATAGGAAAATTGAGAAAGAATGCAAATAAAAGATAGAGGGGCATAAAATCAATGGAGAGTTGAAAGTTGACTCCCAAGAGCTTGGTGTGTGTGAGTGTGAGTATGTGATAAGCTTCTCATCCCTGCATAGATGCAGTATTCTTAGCCTTAGTAGAGACACTTGGTTTAGTGGTTTAAGCCTTGTGTGGCAGATAAATTTTAAAGGACAAAGCAGTGCTAGCTCTGTCTGTCTATATAAATAAAGAAATGGCTTAGCCATACAGTTAAAACTATCTGGTTATCCTACATATTAACACAAACTGGGGGTGGATACAGAATTGTATTTACTGTTTACAATCTAGGCTTTTTAGTCTAGGCACTTTTTGAAAAACCTTTGTCCCCATTCGAGAGGTACTTGCCTAATTTTACCTCTGAGCTTTCAGGTAGACAGATGTGATTCAAAACTACATTCTAAGGTGTTTACTGTAGTGGAGTAATTGGTCTACAGTAATAAGTCACACTTTTCTACTAAAGGGGAGGA
>XM_015135050.2
TCAGCGGCGCCGTGGGCGGGCCGCGGGCGCGCACGCTCCGGGCCCGCAGTTGAAGTGGCGAGAGCGCTCAGAGAAGCGACGCATAGCAGGCGGGGACGGAGCGGGTGCCTCAGTGtccttcccctcccctctcctggcctcgccgtcctctccCCGCAGCCGGACCGGAACTATGTGATCCCGGAAGTTCCGGGGCCTTTGCTGTGTGGGATAAACAGTAATGGCGGAGGCTGCAGCTCCCGGAACAACAGCCACAACATCAGGagcaggagcggcagcggcggcggcggcagcagcCTCCCCCACCCCGATCCCCACAGTCACCGCCCCGTCCCTGGGGGCGGGCGGAGGGGGCGGCGGCAGCGACGGCAGCGGCGGCGGCTGGACTAAACAGGTCACCTGCAGGTATTTTATGCATGGGGTTTGTAAGGAAGGAGACAACTGTCGCTACTCGCATGACCTCTCTGACAGTCCGTATAGTGTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTATGGAGACCGCTGCAGATATGAACATAGCAAGCCATTGAAACAGGAAGAAGCAACTGCTACAGAGCTAACTACAAAGTCATCCCTTGCTGCTTCCTCAAGTCTCTCATCGATAGTTGGACCACTTGTTGAAATGAATACAGGCGAAGCTGAGTCAAGAAATTCAAACTTTGCAACCGTAGGAGCAGGTTCAGAGGACTGGGTGAATGCTATTGAGTTTGTTCCTGGGCAACCCTACTGTGGCCGTACTGCACCTTCCTGCACTGAAGCACCCCTGCAGGGCTCAGTGACCAAGGAAGAATCAGAGAAAGAGCAAACCGCCGTGGAGACGAAGAAGCAGCTGTGCCCCTATGCTGCAGTGGGAGAGTGCCGATACGGGGAGAACTGTGTGTATCTCCACGGAGATTCTTGTGACATGTGTGGGCTGCAGGTCCTGCATCCGATGGATGCTGCCCAGAGATCACAGCATATCAAATCGTGCATTGAGGCCCATGAGAAGGACATGGAGCTCTCATTTGCTGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTGGTCTATGAGAAAGCCAACCCCAGCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCACACCTACTGTCTCAAGTGCATTCGCAAGTGGAGGAGTGCTAAGCAATTTGAGAGCAAGATCATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGGGTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCTGAAATACAAGGAGGCAATGAGCAACAAGGCGTGCAGGTATTTTGATGAAGGACGTGGGAGCTGCCCATTTGGAGGGAACTGTTTTTACAAGCATGCGTACCCTGATGGCCGTAGAGAGGAGCCACAGAGACAGAAAGTGGGAACATCAAGCAGATACCGGGCCCAACGAAGGAACCACTTCTGGGAACTCATTGAGGAAAGAGAGAACAGCAACCCCTTTGACAACGATGAAGAAGAGGTTGTCACCTTTGAGCTGGGCGAGATGTTGCTTATGCTTTTGGCTGCAGGTGGGGACGACGACCTAACAGACTCTGAAGATGAGTGGGACTTGTTTCATGATGAGCTGGAAGATTTTTATGACTTGGATCTATAGCAACCTTGCGTGGCGTGTGAACTGGTCTGCTGACCCCAGACAGCAGCTGTGCCCTGTGGTGGTGCGGCAGGGCCTGTGTTCTCTCCTAGGCAGGCCTCTCAACTCCAGGTGCTGTCCTAAGAATTTTTACCCAGGGCCTGTCTTCTCAACCCCTCACCTTTCCCTGAGGAGTGTGTTGTTTTCCCTGTTGAAAAAAAGTTACAAAAATAAATCTTAAAGTTAGTTTTTTGTAACACAAATTTAACTGTCAGACAGTTAGTGTAGGTGTGTTGCGTCATCTGTTTTCAACCAGATTGCGTTTATGGACTTTTCACACACTCATTTTGAGGACCCCAGGTTCAAAAGTAAAAGCAGTGGCCCTGCTTTGGGGTCCAAGAATAGGAGTGATGGGTGAAGGGACCTAAGCTGGCCAATAGCCCTCTGCCCCAGACATGGGATGTGGATCCTTGAGGTTTCTGGTGAAATCTGCACATCTGTGTTTTTTTTTATCTGTTCCCTACCCTGTAATCCCTACCACGTGCACTTGTTCTGTGGTTTTGGTCTCTTGTTTAATTGCACACAAGTAATACTACTGGGTAACCAGAATCAGGGGTGAATGTGTTGAGATTTCTACTGTTTTGCATGATAGGAAAATTGAGAAAGAATACATATAAAAGATAGAGAGGCATAACATCAATGCAGAGTTGGAAGTTGACTCCCAAGGGCTGACATGgtgtgtgtgagtgtgggtgtgtgATAAGCTTCTCATCCCTGCATAGATGCAGTATTCTTAGCCTTAGTAGAAAAACTTGGTTTAGTGGTTTAAGCCTTGTGTGACGGATAGATCTCAAAGGGCAAAGCAGTATATTGGTAGTTGTCAATATAGCAGTGCTAGCTCTGTCTATATAAATAGAGAAATGGGGTTAGCCATAGAGGTTAAAACTACCTGGTTATCCCATATATTAACACAAACTGGGTCTTGGATACACAGTTGTATTTAATGTTTTACGATCTAGCCTTTCCAGTACAGGCACTTTCTGAGAAACCTTTGTCCTCATTTGGGGCATTTTGTTGTCGGGTTTTTAGTGTTTGTTTTTGTGAGTATCTGCCTCATTCCACCCCTGAGCTTTCAGGTAGACAGATGTGGTTCAAAACTCTGTTCTAAGGTGTTTATTGTAGTGGAGTAATGGGTTTGCAGTGATAAGTCATACTTTTCCACCGAAGGGGAGGGCTTGGGAGAATCCCTGAGACTAGCTAAAGTTAAGTTGTTGGAAGAATTCCTTGATTGGAAATTTTACCTTTGTGTTTTGTTGCTCTGTTTCCTGAAAGTAACTCGGGGATGCTCCTGGTGTGTCCATCTACTGCTTTGATTCCTTGGATCCCGCTCATTCTTTCACTTTAAGAAAAAACAAATAATTGTTGCAGAGGTCTCTGTATTTTGCAGCTGCCCTTTTGTAAGAAGCACTTTTCCCAAATAAAACAATTTAAAAAAAAAA

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