Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name SPRING1P3
Plot displaying the genomic locations of a retrocopy (in chr16) and its respective parental gene (in chr9). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr16:52323885-52324152  UCSC
Strand +
Parental Sequence XM_002753052.5
Parental seq. overlap 227 bp
Parental seq. overlap (%) 15.7%
Genomic Region Intragenic (IQANK1)
Retrocopy Summary SPRING1P3, located on chr16:52323885-52324152, is a retrocopy of the parental gene SPRING1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name SPRING1
Full Name N/A
Also known as C12orf49|C9H12orf49
Coordinate chr9:117327002-117347115
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens SPRING1P3
Chimpanzee Pan troglodytes C12H12orf49P1
Bonobo Pan paniscus SPRING1P1
Gorilla Gorilla gorilla C12H12orf49P1
Baboon Papio anubis C9H12orf49P1
Golden snub-nosed monkey Rhinopithecus roxellana C10H12orf49P3
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>SPRING1P3
GTCCTCAGCAGCACCTTCTGGCAGGAAGAGAGGGAGTGAGATGTAGGACTCTCCTCCAGGTTCAAGACCATGACCAGCCCATCCTGTGGAACGTGCAGTTTAACCTGGGCAGTAGCAGTCACCCAAGCAATCAGTGACAGAACTCTGTTCAAGAGAAGCTCCTCATCACAGATGAACCAGGTAATATTTGTGAGAGGACGGATTTGCTGGTGAAAGGTTGTAATGTCCACATCCCTAGCGCAAAGCAGTACTGCTGTGATGTCTGCTG
>XM_002753052.5
AGGGCGGGGTCACGTGGGGCGGCGGGCAGGGCTGCCGGGAGCTGACAGGGCCGTGGGCCGTGGGGCCGGCGCCCACCTGGAGGGATGGGGTTGCCGGGCGCGTAGGGGCCATGCCGCCCGGATCCCGGGCCTCCCGCGTTCCGCGCCCCGGCCGCCGCGCCCCACGTCCGCGCCAGGATGGTGAACCTGGCGGCCATGGTGTGGCGCCGGCTTCTGCGGAAGAGGTGGGTGCTCGCCCTGGTCTTCGGGCTGTCGCTCGTCTACTTCCTCAGCAGCACCTTCAAGCAGGAGGAGAGGGCAGTGAGAGATAGGAATCTCCTCCAGGTTCAAGACCATGATCAGCCCATCCTGTGGAAAGTGCAATTTAACTTGGGCAACAGCAGTCGTCCGAGCAATCAGTGCCGCAACTCCATTCAAGGGAAGCACCTCATCACTGATGAACTCGGCTACGTTTGCGAGAGGAAGGATTTGCTGGTGAACGGCTGCTGTAACGTGAACGTCCCCAGCACAAAGCAGTACTGCTGTGATGGCTGCTGGCCCAACGGCTGCTGCAGCGCTTACGAGTACTGTGTCTCCTGCTGCCTGCAGCCCAACAAGCAACTTCTCCTGGAGCGCTTCCTCAACCGGGCAGCTGTGGCATTCCAGAACCTCTTCATGGCAGTCGAAGATCACTTTGAGTTGTGCCTGGCCAAATGCAGGACCTCATCCCAGAGCGTGCAGCATGAGAACACCTACCGGGACCCCATAGCAAAGTATTGCTATGGAGAAAGCCCGCCCGAGCTCTTCCCTGCATGACGGGTGCAGCGGACTTGGTCCAGCCCGGGTAAGGAGGCCCCGCTGAAGAACTCACCTCCTGGGGCCCAGCTTTGGCAATCGGGACCAGGCTGTGGGAAGAAGACAAAGGCAGGGCGAGGAAACCTTGGCTTTGACCACGTCTCGTGTTGTCATCTTTGGCTTTGCTTACCACCGGGCTTACCAGATGGAACTCTTCTGCATAGCAACTTGGACCCTCCAGCCCGTCCCATTCGGGAAAGATGAAACCACAGGCCGGGCTCGTGGTGGTGTCGGAGTTCTTGGGTGACTCAGCCCTGGGACCTGCACAGGGACTTGTGACTTGTGTTCATCAGGGGCCGGTGTCACCTCCAGTTTTGATCCAGGCCCTTTCactgtaaaattatttattgggTTCCTTTGGAGCAATGGGAAAATTCTAATGTTTTATGTAGGAAGATGCCATGCCATTCTAGTGGAATATGttcaaggaaattatttttattgttggtcTGTGTTCTCAACTTTTGGGAGTTAAATCATTCTTTCACCCAGATAAACAAACATTTTGTCTTTTAGGACATGGGTGCTTTCTCTAGgcagttatttttgtttgtattttgacaGTAACAAGCATAGGCCCTGAACATGACCTGTTAACCATATCCTAA

Publications

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