Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name ST13P12
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr8:105920832-105923306  UCSC
Strand -
Parental Sequence XM_002743799.5
Parental seq. overlap 1669 bp
Parental seq. overlap (%) 46.8%
Genomic Region Intergenic
Retrocopy Summary ST13P12, located on chr8:105920832-105923306, is a retrocopy of the parental gene ST13. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name ST13
Full Name N/A
Also known as -
Coordinate chr1:189909553-189964194
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens ST13P23
Chimpanzee Pan troglodytes ST13P12
Bonobo Pan paniscus ST13P12
Gorilla Gorilla gorilla ST13P11
Orangutan Pongo abelii ST13P12
Gibbon Nomascus leucogenys ST13P13
Green monkey Chlorocebus sabaeus ST13P16
Crab-eating macaque Macaca fascicularis ST13P6
Rhesus Macaca mulatta ST13P6
Baboon Papio anubis ST13P6
Golden snub-nosed monkey Rhinopithecus roxellana ST13P7
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>ST13P12
GTCACGCCAAGCCAGCACCTGGGCCTGGAACTGGACTGCAGCCCCTCAGCTTTGCCCACTGCCTCTCGACCATAAACCCCCTCAAAGTGAACGAGCTTTGGGCCTTTGTGAGAATGTGTGAGCAGGATCTGAGTGTTCTGCACACCGAGGAAATGCACTTTCTGAGGGAGTGGGTGGAAAGCATGACGGGGAGGTACAACCTGCTACTCAGAAAGCTCAATCAGAAGAAAATACCAAGGAAGAAAAACCTGAGAGTAAGAAGGTGAAGGAAGACTTAAAGGCAGACGAACCATCAAGTAAGGAAAGTGATGTAGAAATTGACCATGAAGGTGTAATTGAACCAGGCACTGATGCCCCTCAAGAAATGTGAGATGAACATGCAGAGATAACAGAGCAGATGATGGATCTGGCGAATGATAAGAAACTGGCCGCTCGGAAGCCCTAAATGAAGGTAAACTGCAGAAAGCCATCGACCTATTCACAGATGCCATCAAACGGAATCCTCGATTGGCCATTTTGCATGCTAAAAGGGCCAGTGTCTTCGTCAAATTACAAAGCCAAATGCTGCCATCCGAGACGGTGACAGAGTCGTTGAAACAAATCCTGATTCAGCTCAGCCTTACAGGTGTCGAGGGAAAGCACACAGACTTCAGATCCTGAAAAGAAGCGACCCATGATCTTGCCCTTGGCTGTAAATTGGATTATGATGAAGATTCGAGTGCAATGCTGAAAGAAGTTCAACCTGGAGCACAGAACATCGCAGAACATCTGAGACAGGATGAGTGGAAATGTGAAGAGTGAGAgatcaaataaagaaaagagttaaGAAGGCCGGAGAAGAGATGAGAGCGcccagagggaggaagaagcCAGACGACAGCCAGGAGCTCAGGGTGCTCTTTTGCAGGTGGCTTTCCTGGGGAAATGCCTGGTAATTTTcctggaggaaagggagggagcaTGCCTGGAGTGGCCGGAATGCCTGGActcaagaaaatCTCAATGAAACTCTCAGTGATCCAGAGGTTCTTGTAGTCATGCAGCGCCCAGAGTTATGGTGGCCTTTCAGGATGTGGCTCAGAACCACAAATATGTCAAATTCCAGAGCAACCCAAAGGTTGTGAATCTTATCAGTAAATTGTCAGCCAAATTTGGAGGTCAAGTGTAATGCCCTTCTGATAAAGAGCTACCTAGCTCAGCCTATGGATGTCACAGTAACACAAGCCGCTGTGCCTCTGACCTTCTTATCAAGAGAGCTGGGGTGCTTTGAAGATAATCCCTACCCCCTCCCCAAAAAGCAGCCGAAGCATTTTACAGTCATTTGCCATTAGGGTAttcactcagataattttttcctACTAGGAATTACAAactttaaacactttttaaaccttaaaaacatttaaaacaaatataaaggaTCTGttcattcttgtatttttctttactaatcattttggactttttttctttgaattattgtGCAGGGAAGATACTTGTGTATGGAAGCTTATTGCTCTGATCTGagtgaaataaaagtttattagtGTGAGGCAAACATAACTCATTGGAAGATGAAGTTTGTGTTGGATATGTGGTTCCTGAAGCATTCTGACTTGTTTTATTAAATGCCTTATCTTTTGCTTTAAAGATTTATTTCAGTAAAACTAATTGGGACCACCAGTATTTCAGTAGAACCTGGGTAGGGACTGGAAGTGCTTGGCAGGGTGGCAGCAAtcttgctgtgctgctgtgtcttATACAACACGCATCCTTGGGCAGGTTGCCCTGAAATCTTACGTTTTGGTGAAGGGGTAATGATTTTGTAATGCTGCAGTAGAGTTGGAGTACTTAGTTCTTCTTGTCCGGTATATCTAATAAATGTTTCATATTATC
>XM_002743799.5
GCAGAATGTGACGTCATTCCCCGGGCTGGGACCGCCCCTCCGGCCCCACGCCCCTATTTAGGTCGGGGGTTAAACTCTACTCGGTGCCGTCAACAACCGAATGTGCTCTTGGACGTCGGTTCCTGGAAAGGCTGCTATCTCTCGCCTCTTTGAAGGTGCCCATGCTGAGGGTTGCCACCTCCAGGGAGCTGGTTCCTAGTTAAGAATATGAGAATGTGTACGCAGAGAGGCAGGCAACAGCACGAACAGCCACGCTTCTAGAATGTTCTAGGGAGCGCGCAGGAGCAGCGCAGAGCGAGTAGGAAGGGGCAAGCGGAGGACCCGGGGTCACGAGATCGTTGGGTGGGAGGAGCCAGCGGTCGGGGAGGTTCTAGTCTGTTCTGCCTCGCGGCGGACGCCCCCCTCTGCGCGGTCACGCCGAGCCAGCGCCTCGGCCTGGAAGCGGGCCGCAGACCCTCAGCTTCGCCCACCGCTTCCCGACCATGGACCCCCGCAAAGTGAACGAGCTTCGGGCCTTTGTGAAGATGTGTAAGCAGGATCCAAGCGTTCTGCATACCGAGGAAATGCGCTTCCTGAGGGAGTGGGTGGAGAGtATGGGGGGTAAAATACCACCTGCTACTCAGAAAgctaaatcagaagaaaataccaagGAAGAAAAACCTGATAGTAAGAAGGTAGAGGAAGACTTAAAGGCAGACGAACCATCAAGTGAGGAAAGTGATTTAGAAATTGATAATGAAGGTGTGATTGAACCAGACACTGACACCCCTCAAGAAATGGGAGATGAAAATGCAGAGaTAACAGAGGAGATGATGGATCAggcaaatgataagaaagtggcTGCTATTGAAGCCCTAAATGATGGTGAATTGCAGAAAGCCATTGACTTATTCACAGATGCCATCAAGCTGAATCCTCGCTTGGCCATTTTATATGCCAAGAGGGCCAGTGTCTTCGTCAAATTACAGAAGCCAAATGCTGCCATCCGAGACTGTGACAGAGCCATTGAAATAAATCCTGATTCAGCTCAACCTTACAAGTGGCGAGGGAAAGCACACAGACTTCTAGGCCACTGGGAAGCAGCAGCCCATGATCTTGCCCTTGCCTGTAAATTGGATTATGATGAAGATGCGAGTGCAATGCTGAAAGAAGTTCAACCTAGGGCACAGAAAATTGCAGAACATCGGAGAAAGTATGAGCGAAAACGTGAAGAGCGAGAGatcaaagaaagaatagaaagagtTAAGAAGGCTCGAGAAGAGCATGAGAGAGCCCAGAGGgAGGAAGAAGCCAGACGACAGTCAGGAGCTCAGTATGGCTCTTTTCcaggtGGCTTTCCTGGGGGAATGCCTGGTGGTTTTCCTGGAGGAATGCCTGGAATGGGAGGGGGCATGCCTGGAATGGCCGGAATGCCTGGACTCAATGAAATTCTTAGTGATCCAGAGGTTCTTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCTCAGAACCCAGCAAATATGTCAAAATACCAGAGCAACCCAAAGGTTATGAATCTTATCAGCAAATTGTCAGCCAAATTTGGAGGTCAAGCATAATGCCCTTCTGATAAATAAAGCCTTTGCTGAAGGAAAAGCAACCTAGATCACCTTATGGATGTCGCAATAATACAAACCAGTGTACCTCTGACCCTCTCATCAGGAGAGCTGGGGTGCTTTGAAGATAATCCCTATTCCTCCCCCAAATGCAGCTGAAGCATTTTACAGTGGTTTGCCATTAGGGTATTCATTCAGTTAATGTTTTCCTACTAGGAATTACAAACTTTAAacactttttaactttaaaaatatttaaaacaaatttaaagagtctgttaattcttatatttttctttactaatcattttgcatttttttctttgaattattggGCAGGGAAGATTCTTAATGTATAGAAGATTTTTTCTCTAATTCGagtgaaataaaagtttattagtGCAAGGCAAACAACTCATTTCAGGATAAAGTTTGTGTTGGATATGTGGTTCCTGAAGTATTTTGACTTGTCTTTTTAAAtgcttcatctttttctttaaagatttatttcGATAAAACTAATTGGGACCACCAGTATCTCAGTAGGACCTGGGTAGAGACTGGAAGTATTTGGCAGGGCAGCAGCAATCTTGCTGTGTTTTATATAACGTGCATCCTTGGGCAGGTTGTCCTTAAATCTTACACTGTGGTGAAGGGATGATTTTTTTGTAATGCTGCAGTAGAGTTGGAGTACTTAGTTCTGTTCTTGTCTAGTATATCtaataaatatatcatattatTTCCACATAGGGGAAATAAGGgagtacttttctttttatatttctatgctTAAAATTCTCTTTCCTAGTCAAAAAATGCCCAACTCTCTGTCTGCTTTCTGCTTGTTAAGGTTTTTCTCCCTGACTTTTCTTGGGCTAAAGACAGGCTTTTTCCACCAGTATCATCACTGCTATCATCATTAACAGCATAATTATGCAAGCATATTTAATGCTGAGTTTAAtttaatatgtaatacatatggTAATTGTAGGGTAATACCCACAACTGTAGTTTCTTACTTGGCCATGAGAATGCTTATTTAAGTTCCACTCTGGCAAAATCTTGTCATATCAAAAGAAATTGGAAAGAGGGATTCCCTTTGGTGTTTGGTCTTCTACTTAGAAAATACCTATTGCAGTTATAGTTTATCTTGTagtattcatctttgtattttgaaGATAATAAGGTTTGAATTAAATTGATATACACAGAGAGGAACCCATTTTTTTGATCCAATGTAAATTATACATGAGATAATCCACAGTTATTCATTGTGGAATTGTTGAGACTATGAAAGACTCATTGTCTTTGTATTCAGCTCTTCCTTAAATAGTGTAACAATACCCCCACCTCtgcttgcttgctttcccttccctccaatgataaagaaaatgagaaattttctGTTGTGCAttcaattcttattttaaataagactAAGTATAGGCATTGTACCTGACATTGCTATGTTTCTACCAATGTTTCAACTTAAAGTGAtagtgtttaaaaacattttcaagggATAAGACCTTCCGTACTTTGCTTATTTGAAGAATCAGTGGATCAGTGGTAGGAGCAGTGAAGTAAATTCTATGGAGTACATTTCTAAAATAGCACATTTCTGAAATTATAAATAAGTTTATTCCGGTTCTAACCCTTTGCCGTACACAAGCAGACAGAAATGCATCTGTTATGTAAATGAGAAAAAGCTATTATGCTGATGGAGCATGCTTTTTAAATCCTTTGAAAACACTCACCATATAAACTTGCATTTGAGCTAGCGTGTTCTTTTTGTTAATGTGTGTTCTCCTTTCTCAGAATTGCCAGTATGTACTTGGCTTAAGAACAGGTTTTTTTTGGATTCCTCATTTGATTTATTTAACCTAATTATGTTCTGATATTGCAAATATTACCATAAGTGGGTAAAAGTaaatttcctcttctgaaaa

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