Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name UBE2V1P20
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Callithrix jacchus
Coordinates chr13:57208042-57208704  UCSC
Strand -
Parental Sequence NM_001205089.1
Parental seq. overlap 500 bp
Parental seq. overlap (%) 60%
Genomic Region Intragenic (METTL4)
Retrocopy Summary UBE2V1P20, located on chr13:57208042-57208704, is a retrocopy of the parental gene UBE2V1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name UBE2V1
Full Name N/A
Also known as -
Coordinate chr5:43568760-43602558
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens UBE2V1P23
Chimpanzee Pan troglodytes UBE2V1P17
Bonobo Pan paniscus UBE2V1P17
Gorilla Gorilla gorilla UBE2V1P17
Orangutan Pongo abelii UBE2V1P15
Gibbon Nomascus leucogenys UBE2V1P6
Green monkey Chlorocebus sabaeus UBE2V1P15
Crab-eating macaque Macaca fascicularis UBE2V1P16
Rhesus Macaca mulatta UBE2V1P18
Baboon Papio anubis UBE2V1P20
Golden snub-nosed monkey Rhinopithecus roxellana LOC115892954P13
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>UBE2V1P20
GACAGCGACACAAGATGGCAGCCACCACAGGCTCAGGAGTAGGAATACCTCACAATTTCCAACTGTTGGAAGAACTCGAAAAAGGCTAGCAAGGAGTAGGAGATGGCACCATTAGCAGGAGTCTAGAAGATGATGAAGACATGACACCAAATGGACAGGGATGATAGTAACAAAAATTAACATGGAGTTAACTGTCCTAAAGAAGTGGTGGACTCAAGAGCCATTTCAGTCCTAGCAAAACAGCAGAATTCATATAGCATCAAAATTGTCCTGGAAGAGGTTGAACACCTAATGACATctaaagaaaacatgaaactcCCTCAGGAGCCTGAAAGACAGTGTTACAGCCATTAATCCAAAAGAAAAACCACTGGCCCTTTTTCCCACCCCCATTCAACTTAAGCAGTCTTCATTTTCCACAGTAGTAAATTTTCCAGATATATCTTATAGACCCCAAAGTACTAGAAAGGATCCTCCTATTCAAAAGAAATTTATCTTAAGATACTGTGAATGATACTAACTTTTTTATCCATTTGAAATATAACAAATTGTACTATAACAAATCAC
>NM_001205089.1
GGGGGGTGAAGAAGGGGCCGGCCTTCAAGCGACAGCGACGCAAGATGGCAGCCACCACGGGCTCGGgaGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAGGCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGGACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACCTAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGtaacaaaaattaatatgaatgGAGTTAATAGTTCTAATGGAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAAGAGCTTCGGCGCCTAATGATGTctaaagaaaacatgaaactcCCTCAGCCGCCTGAAGGACAGTGTTACAGcaattaatcaaaaagaaaaaccacaggcccttcccttcccccccaTTCGATTTAAGCAGTCTTCATTTCCACAGTAGTAAATTTTCTAGATACGTCTTGTAGACCTCAAAGTACTGGAAAGGAAGCTCCCATTCAAAGGAAATTTATCTTAAGATACTGTAAATGATACTAACTTTTTGTCCATTTGAAATATATAAGTTGTGCTATAACAAATCATCCTGTCAAGTGTAACCACTGTCCACGTAGttgaacttctgggatcaagAAAGTCTATTTAAATTGATTCCCATCATAACTGGTGGGGCACATCTAACTCAACTGTGAAAAGACACATCACACAATCACCTT

Publications

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