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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Atp5bP2
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chrX:141135372-141135623  UCSC
Strand +
Parental Sequence NM_134364.1
Parental seq. overlap 207 bp
Parental seq. overlap (%) 11.7%
Genomic Region Intergenic
Retrocopy Summary Atp5bP2, located on chrX:141135372-141135623, is a retrocopy of the parental gene Atp5f1b. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Atp5f1b
Full Name ATP synthase F1 subunit beta
Also known as Atp5b
Coordinate chr7:2504708-2511748
Strand +
Gene summary Enables adenyl ribonucleotide binding activity; calcium ion binding activity; and lipoprotein particle receptor activity. Contributes to ATP hydrolysis activity. Involved in several processes, including cold acclimation; response to 3,3',5-triiodo-L-thyronine; and response to curcumin. Located in cell surface; membrane raft; and mitochondrial inner membrane. Part of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1). Used to study obesity. Biomarker of cardiomyopathy; polycystic ovary syndrome; transient cerebral ischemia; and type 2 diabetes mellitus. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Mouse Mus musculus Atp5bP2
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Atp5bP2
ACTGCCTCTGAAACTACCGTTGCTCACTTGGATGCTACTACTGCACTGTTTTGAGCTACTGCTGTCTTGGGTATCTCTCCAGCTGTGCATCCTCTGGGCTCTACCTCACTTTACATAGATCCCAATATTGTTGGCAATGAGCATTATGATGTTGCCTGTGGGGTGCAAAAGTTCTTGTAGGACTTCAAATTCCTCCAGGACACCATTGCCCTTATGGGTATGGATAGATTTTCTAAGGAAGATAAATTGACT
>NM_134364.1
CAGTCTCCACCCGGACTCCGCCATGTTGAGTCTTGTGGGGCGTGTGGCCTCGGCCTCGGCCTCCGGGGCCTTACGGGGACTCAACCCTTTGGCGGCGCTGCCACAGGCGCAGCTTCTACTACGAACCGCTCCCGCCGGGGTCCATCCTGCCAGAGACTATGCGGCGCAGTCGTCTGCGGCCCCGAAGGCAGGCACCGCCACCGGGCAAATTGTGGCAGTCATCGGCGCCGTTGTGGATGTCCAGTTCGATGAGGGATTACCACCTATCCTAAATGCCTTGGAAGTGCAAGGCAGGGAGAGCAGACTGGTTTTGGAGGTAGCCCAGCATTTAGGGGAGAGCACCGTCAGAACTATTGCTATGGATGGCACTGAAGGCTTGGTTAGAGGCCAGAAAGTACTGGATTCGGGGGCACCAATCAAAATTCCTGTTGGTCCTGAGACCTTGGGCAGAATCATGAATGTCATTGGAGAACCTATTGATGAGAGAGGTCCTATCAAAACCAAACAATTCGCTCCTATTCATGCTGAGGCTCCTGAATTCATAGAGATGAGTGTTGAACAGGAAATTCTGGTGACTGGTATAAAGGTTGTGGATCTGCTGGCCCCATACGCCAAGGGTGGGAAAATCGGACTCTTCGGAGGTGCTGGTGTTGGAAAGACAGTACTGATCATGGAGCTAATCAACAATGTTGCTAAAGCCCATGGTGGTTATTCTGTATTTGCTGGTGTTGGTGAGAGGACCCGTGAGGGCAATGATTTATACCATGAAATGATTGAGTCTGGTGTTATCAACCTAAAAGATGCCACTTCCAAGGTAGCGTTGGTATATGGGCAGATGAATGAACCGCCTGGTGCTCGTGCCCGGGTAGCTCTGACTGGTCTGACTGTTGCTGAATACTTCAGAGACCAGGAAGGCCAAGATGTCCTGCTGTTTATTGACAACATCTTCCGCTTCACCCAGGCTGGCTCAGAGGTATCTGCCTTATTGGGCAGGATCCCGTCTGCTGTAGGCTACCAGCCTACCCTAGCCACTGACATGGGTACAATGCAGGAAAGAATCACCACCACCAAGAAGGGCTCGATCACCTCAGTGCAGGCTATCTATGTGCCAGCTGATGACCTGACTGACCCTGCCCCTGCAACTACCTTTGCCCATTTGGATGCTACTACTGTGCTGTCCCGTGCTATTGCTGAGTTGGGCATCTATCCAGCTGTGGATCCACTGGACTCCACCTCTCGAATTATGGATCCCAACATCGTTGGCAGTGAGCATTATGATGTTGCTCGTGGGGTGCAAAAGATCCTGCAGGACTACAAATCTCTCCAGGACATCATTGCCATCTTGGGTATGGATGAACTTTCTGAGGAAGATAAATTGACTGTGTCCAGGGCAAGGAAGATACAGCGCTTCTTGTCACAGCCATTCCAGGTTGCTGAGGTCTTCACAGGTCACATGGGAAAGCTGGTGCCCCTGAAGGAGACCATTAAAGGATTCCAGCAGATCTTAGCAGGTGACTATGACCATCTCCCGGAACAAGCCTTCTACATGGTGGGACCCATTGAAGAAGCTGTGGCAAAGGCTGACAAGCTGGCAGAGGAGCATGGGTCGTGAGGGGCCCTTCAGCCAAACACAACAGCACTCTGCACTGACCTCCATGCTGAGAGCTCAGTTTGCCATGTAGGCCACACAAGAGCCTTGATTGAAGATGTGATGTTCTCTCTGAAGAGTATTTAAAGTTTTCAATAAAGTATATACCCT

Publications

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