Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name CicP1
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Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr1). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chr11:46984671-46986087  UCSC
Strand +
Parental Sequence XM_008758938.2
Parental seq. overlap 1280 bp
Parental seq. overlap (%) 22.6%
Genomic Region Intragenic (Senp7)
Retrocopy Summary CicP1, located on chr11:46984671-46986087, is a retrocopy of the parental gene Cic. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Cic
Full Name capicua transcriptional repressor
Also known as -
Coordinate chr1:82135440-82163007
Strand +
Gene summary Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in several processes, including learning or memory; regulation of transcription, DNA-templated; and social behavior. Predicted to act upstream of or within lung alveolus development and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 45. Orthologous to human CIC (capicua transcriptional repressor). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CicP1
TGCAGTGAGGGCAGTAGTGGGAGGGTAGCTGGGGACACACCTGAGTGAAATGAAGGGACTAGTTCTGGCAAGAAGATGAAGGTGCACCCCCTCTCCTGAAGAAGACCTTTGACTCTGTAGACAACAGGGTCCTGTCAGAAGTGGATTTTGAAGAGCGGTTTGCTGAGCTGCCCGAGTTTAGACCAGAGGAGGTGCTGCCCTCACTGGCCCTACAGTCTCTGGCCACCTTGCCTCAGGCTATCCTTGGCTCCTACCGAAAGAAGAGGAAGAATTCCACAGAACAGTTCGACCTGAACTCGGCATCTGAGGACCCCACTTCACCCAAGCACAAGATGGTCCAGCTTTAGTTCAGAGTCCAACACCCCCAAGAGTGCCAAGTGCAAAGGGGACATCTTTACCGTAGACTGCACAGGTAGTGAAATGGAGGATGTGCTTGGGGAGCTGAAGTAGGTGCCCTACTCATCACTGTGGTGCACCCTTGACTAACAGCAGGCCCTGGTCATGCAGCTCTTCCAGGACCATGGCTTCTTCCCATCAGCCCAGGCCATAGCAGCCTTCAAGGCCGCTATGACATTTTTCCATCCAAGGTGTGTCTGCAATTAAAGATCTGAGAGGTTCGCCAGGAGATCGTGCAGGCCACTCCCACAGAGCAGCCCTCTGGGCTGAAGCCCCCTCCCTGGATCACCCCCTACTGGCATGGCTGCTACTCCTGTCCCCACTCCCAGCCCAGCTGGGGGCCCTGACCCCACCTCTCCAGGCTCCAACTCTGGCATTGCCAAAGTTGCCCCACAACTGCCTCCACCCCCCACCCCCTCCCCAACACCCCTCAAGCCTGGGCCTGGACAGCCTGACTGGGAGGAGGCTACCCAACCCTCACCCTTCCCTCTGACCCTTCCACAGCTGCCACAGGCAAGTGAGGAGCCCTTGAAGAGACTCCAGGACCCATAGTACCTACCCCCTCAGAATATAGACAGTATATAGATGGCAGGGATTGGAGGCCAGACAGTGGGATAGTTGCCTCCTACCCAGGAAGCCATTTCGTCCTTTCCAGTTTGATGTGGAATATGCCCTATTTCCCTTGTATATATTCCTCCCTGTGCTGAGGGGCAGCAGGGGCAGATACCCTCAACTGAGCTCTTGAACATATATCCTAAAGTGTGTGACCTTCAGACCTTTTCACTTGTACTTTATGCAGAATGGCTCCTGTGAGGGCTGCAAGCTGGAGGGTAGAATGAGCCTTGGGCCACAGGGAGAAGCTGCTTGTGGAGCAGTGGGGAGTTCATGTACCCCCTTTTTCCCCAGAGGGGCTGGACTCAGGTTAGTTTGGGGTGGAGGGGCTCCTGCACTTTGCCACAGGCATGGGGAGGATTGTCCCTACCCTCTGCCCCCCAACTTGGGTTGTACTTTCTAAGAAGGT
>XM_008758938.2
TTTGCGCAGGCGCGCCCGGCGAAGACCCCCGCGTGGGGCGGCCGGAGGGGGCTTGGGGGGGGGCATGCGGCGACGGCCTCCCGCTCCCCCCGGGCCGGAGCGGCGACGGCCAAGGAGCAGGTTACGGGCAGAGCGGTGTCGGCCGCTGAGGAGGTGCGATCCCCTGTCGGGTTCCCGCTGCTCCGGACCATGTACTCGGCCCACAGGCCCCTGATACCCGCGTCTGGCGCGGCCTCCCGTGGCCTCGGCATGTTCGTGTGGACAAATGTCGAACCTCGTTCTGTGGCTGTGTTCCCCTGGCACTCCTTAGTCCCCTTCCTGGCACCCAGCCAGCCTGACCCCTCTGTGCAGCCTAGTGAGGCCCAGCAACCTGCCAGCCACCCTGTGGCCTCCAACCAGAGCAAAGAACCTGCTGAGTCAGCTGCTGTTGCTCATGAGCAGCCACCAGGAGGGACAGGGGGTGCTGACCCTGGGCGACCCCCTGGAGCAACATGCCCTGAGAGCCCAGGGCCTGGACCTCCACTCACTTTGGGTGGTGTGGATCCTGGTAAAAGTCTCCCTCCCACCACTGAGGAGGAGGCTCCTGGCCCTCCGGGAGAGCCCCGGCTGGACAGTGAGACAGAGAGTGACCATGATGATGCCTTCCTCTCGATCATGTCTCCTGAGATCCAGCTGCCTCTGCCACCTGGAAAGCGCCGCACCCAGTCTCTGAGTGCCTTGCCCAAGGAACGAGACTCATCTTCTGAGAAGGATGGACGAAGCCCTAACAAGCGGGAGAAGGACCATATTCGTCGGCCCATGAATGCCTTCATGATCTTCAGCAAGCGGCACCGGGCCTTGGTCCACCAGCGGCACCCCAACCAGGACAACCGGACTGTCAGCAAGATCCTGGGAGAGTGGTGGTATGCTCTGGGGCCCAAGGAGAAGCAGAAATACCACGATCTGGCCTTCCAGGTGAAAGAGGCCCACTTCAAGGCCCACCCAGATTGGAAGTGGTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCTGCGAGCCTGGGTCTGGCAGGAGGGCACAAGGAGACGCGGGAACGGAGCATGTCGGAGACGGGAACTGCTGCTGCCCCTGGGGTGTCTTCTGAGCTCCTGTCCGCTGCTGCCCAGACGCTCTTGAGCTCGGACACCAAGGCTCCAGGGAGTGGCCCCTGTGGAGCAGAACGGCTACATGCAGTTGGGGGACCTGGCTCAGCCCGACCCAGAGCCTTCTCCCACAGTGGGGTACACAGTCTTGATGGTGGGGAAGTAGACAGCCAAGCACTGCAAGAACTGACCCAGATGGTTTCTGGCCCCACCTCATTCTCCGGCCCAAAGCCATCCCCCCAGTATGGCGCTCCAGGATCTTTTGCAGCTCCTGGTGAAGGAGGTAACTTGGCCACTAGTGGGCGGCCTCCACTGTTGCCCTCTCGAGCCTCTCGTTCCCAGCGTGCAGCTAGTGAAGACATGACCAGTGATGAGGAGCGGATGGTCATCTGTGAGGAAGAAGGGGATGACGACGTCATTGCTGATGACAGCTTTGGTACCACTGACATTGATCTCAAGTGTAAGGAACGGGTGACCGACAGCGAGAGTGGAGACAGCTCTGGGGAGGACCCAGAGGGCAACAAGGGCTTTGGCCGTAAGGTGTTTTCACCTGTCATCCGCTCCTCCTTTACCCATTGCCGTCCAACCCTGGACCCTGAGCCTCCAGGGCCCCCGGATCCACCTGCAGCCTTCAGCAAAGGCTATGGTCCCACCCCATCATCCTCCTCTTCACCTGCTTCCACCTCAGTCTCAGTCTCCACCTCCTTTTCACTGGGCTCTGGAACCTTTAAAACGCAGGAGTCTGGTCAGGGCAGCACAGCGGTGCCACTACGGCCCCCACCTCCTGGAGCTGGGGGCCCAACAACACCTTCCAAGGCCACTCGGTTTCTTCCTACGGATTCTGCCACCTTTCGGCGCAAGAGACCTGAAAGTGTTGGTAGCCTGGAGGCACCAGGCTCTTCAGTCATTGCAGCACCTCCCAGTGGGGGAGGAAACATTCTGCAGACACTGGTTCTGCCTCCGAGTAAGGAGGATCGAGAGGGTACACGAGTGCCCTCAGCCCCAGCCCCATCACTGGCCTATGGGGCTCCAGCAGCCCCTTTGTGCCGCCCTGCTGCTACCATGGTCACCAATGTGGTACGGCCTGTCAGCAGCACTCCAGTGCCCATTGCCTCTAAGCCCTTTCCCACCTCTGGCCGGGCTGAGGCATCTTCAAATGACACAGTAGGTGCCAGGACTGAAATGGGCACTGGATCTCGGGTGCCTGGGGGCTCCCCATTGGGTGTCAGtttagtgtattcagataagaagtcagcagcagccacctcACCAGCTCCACATTTGGTAGCTGGACCCCTATTGGGCACTGTGGGGAAGGCACCTGCTACTGTCACCAACCTACTGGTGGGCACCCCAGGCTATGGGGCTCCTGCATCGCCTGCTGTTCAGTTTATTGCCCAGGGAGCCCCAGGCAGTGCAACCCCTGCAGGCTCAGGAGCAAGTGCTGGGAGTGGCCCCAATGGGCCTGTACCTCTGGGCATTCTGCAGCCAGGTGCCCTAGGCAAGGCTGGGGGAATCACACAGGTGCAGTACATCCTGCCCACACTGCCCCAACAGCTTCAAGTGGCACCTGCCCCAGCACCAGCCCCTGGGACCAAGGCAGCAGCTCCCAGTGGCCCTGCACCCACCACCAGCATCCGTTTCACTCTCCCTCCGGGCACCTCGACCAACGGCAAGGTCCTGGCTGCCACTGCGCCCACTGCTGGCATCCCTATCCTGCAGTCCGTACCCTCAGCCCCACCCCCTAAAGCCCAGTCAGTTTCTCCTGTCCAGGCCACACCTTCAGGTGGCTCAGCCCAGCTGCTGCCTGGGAAGGTGCTAGTCCCCCTGGCTGCCCCTAGCATGTCAGTTCGAGGTGGAGGGGCTGGTCAGCCACTGCCCCTGGTTAGCTCGCCTTTCTCAGTACCTGTCCAAAATGGTGCCCAACAACCTAGCAAGATTATCCAGCTGACTCCTGTTCCTGTGAGCACACCTAGTGGCCTGGTACCACCCCTGAGCCCAGCCACAATGCCAGGACCCACATCACAGCCTCAGAAGGTCCTGTTGCCTTCTTCCACAAGAATCACCTATGTACAGTCAGCAGGTGGGCATACTCTGCCTCTAGGCACCAGTTCTGCATGCAGTCAGACTGGAACAGTGACCTCATATGGGCCCGCCAGCTCTGTAGCTCTGGGCTTCACATCGTTGGGGCCCAGTGGTCCTGCCTTTGTTCAGCCACTGCTCTCAGCAGGCCAAGCTCCATTGCTGGCTCCTGGCCAGGTGGGCGTGTCACCTGTGCCTAGCCCCCAGTTGCCTCCTGCCTGTACAGCCCCTGGAGGTCCTGTCATAACAGCATTTTACCCTGGTAGCCCTGCACCCACTTCAGCACCCCTGGGCCCACCTTCCCAAGCTCCGCCAAGCCTGGTCTACACTGTAGCCACCAGCACCACCCCACCTGCTGCTGCCATTCTTCCTAAGGGCCCACCAgcctctgccactgccactccagcccctaccagtcctttccctagtgccacAGCAGGCTCCATGACCTACAGCTTAGTGGCTCCCAAGGCCCAGCGACCCAGCCCAAAAGCCCCCCAGAAAGTAAAGGCAGCCATCGCCAGCATTCCTGTGGGGTCTTTTGAATCGGGTACCACTGGGCGGACTGGACCTACACCCCGACAGTCTTTGGATTCTGGTGTAGCCCGAGAGCCAGCTGCCCCAGAATCAGAGCTTGAGGGGCAGCCCACACCCCCAGCCCCCCCACCCCCAACAGAGACCTGGCCTCCCACTGCCCGGAGCAGCCCCCCACCCCCCCTGCCTGCTGAGGAACGACCTGGCACTAAAGGCCCCGAGACTGCCAGCAAATTCCCCAGTTCATCTTCAGACTGGCGGGTTCCTGGGCTGGGCCTGGAGAGTCGTGGGGAGCCTCCCACTCCTcccagcccagctccagctccagccacaggcccTAGTGGAAGCAGCAGTGGCAGCAGTGAGGGCAGTAGTGGGAGGGCAGCTGGGGACACACCTGAGCGCAAGGAAGTGACTAGTTCCGGCAAGAAGATGAAGGTGCGGCCCCCGCCCCTGAAGAAGACCTTTGACTCTGTGGACAACAGGGTCCTGTCAGAAGTGGACTTTGAAGAGCGGTTTGCTGAGCTGCCCGAGTTTAGACCAGAGGAGGTGCTGCCCTCACCCACCCTACAGTCTCTGGCCACCTCTCCTCGGGCTATCCTTGGCTCCTACCGAAAGAAGAGGAAGAATTCCACGGACCTGGACTCGGCGCCTGAGGATCCCACTTCACCCAAGCGTAAGATGAGGAGACGTTCGAGCTGCAGCTCAGAGCCCAACACCCCAAAGAGTGCCAAGTGCGAGGGGGACATCTTCACCTTCGACCGCACAGGTACTGAAACGGAGGATGTGCTTGGGGAGCTGGAGTATGAGAAGGTGCCCTACTCATCACTGCGGCGCACCCTGGACCAACGGCGGGCCCTGGTCATGCAGCTCTTCCAGGACCATGGCTTCTTCCCCTCGGCCCAGGCCACAGCAGCCTTCCAGGCCCGCTACGCAGACATCTTTCCATCCAAGGTGTGTCTGCAATTAAAGATCCGAGAAGTCCGCCAGAAGATCATGCAGGCAGCCACTCCCACAGAGCAGCCCCCTGGGGCTGAAGCCTCCCTCCCTGGACCACCCCCTACTGGCATGGCTGCTACTCCTGTCCCCACTCCCAGCCCTGCTGGGGGCCCTGACCCCACCTCTCCAGGCTCGGACTCTGGCACTGCCCAAGTTGCCCCGCCACTGCCTCCACCCCCCGAGCCTGGGCCTGGACAGCCTGGCTGGGAGGGGGCTCCCCAACCTTCTCCCCCTCCCTCTGGCCCTTCCACAGCTGCCACAGGCAGGTGAGGGGCCCTTGAATAGACCCCAGGACCCACAGTACCTACCCCCTCAGGATATGGACAGTATATAGATGGCAGGAATTGGGGGCCAGACAGTGGGATAGTTGCCTCCTCTCCAGGAAGCCATTTCGTCCTTTCCAGTTTGGTGCGGAATGTGGCCTGTTTCCCTTGTATATATCCCTCCCTGTGCTGGAGGGCAGCAGGGGCAGATACCCTCCACTGAGCTCTTGTATATATAACCTGAAGTGTGTGACCTTCAGAGCTTTTCACTTGTACTTTATGCAGAATGGCTCCTGTGAGGGCTGCAAGCTGGAGGGTAGTATGAGCCTTGGGCCACAGGGAGAAGATGCCTGTGGAGTAGTGGGGAGTTCATGCACCCCCCTTTTTCCCCAGAGGGGCTGGACTCAGGTTAGTTTGGGGTGGGGGGGCTCCTGCACTTTGCCACAGGCATGGGGAGGATTCTCCCCACCCTCTGCCCTCCCAACTTGGGTTGTACTTTCTAAGAAGGTGATTCCCCTACCATTGTCCCCATTCCCAGAACAAAACATGTTGATCATGTGCAATATTTCTTACTGTGCCGAGAAGCCGCAATGACCGAGATTAAAGCTGTTTAACACAGG

Publications

PMID - Link Title
No publications available for this retrocopy