Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name NelfeP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chr1:253841599-253842509  UCSC
Strand +
Parental Sequence XM_006255922.3
Parental seq. overlap 803 bp
Parental seq. overlap (%) 53.8%
Genomic Region Intergenic
Retrocopy Summary NelfeP1, located on chr1:253841599-253842509, is a retrocopy of the parental gene Nelfe. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Nelfe
Full Name negative elongation factor complex member E
Also known as Rd|Rdbp
Coordinate chr20:4530328-4536085
Strand +
Gene summary Enables chromatin binding activity. Involved in positive regulation of ERK1 and ERK2 cascade; positive regulation of histone H3-K4 methylation; and regulation of transcription by RNA polymerase II. Located in nucleus. Orthologous to human NELFE (negative elongation factor complex member E). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NelfeP1
TTAAGAACTCAGGCTTCAAACGTTCTTGGACCCTGGAAGGGAAGTTAAAGGATGCGGAGAAGGGGCCTCTCCCCACCTCCCTGTCATTCCAGAGGAGTATGTCTGCTGATGACGACCTACAGGAGCCATCCAGACGTCCCCAGAGGAAATCTCTGTATGAAAACTTTGTGTCTTCTAGTGATCAGCTTCAGGAACTGAGACAAGATGGAAAAGAAGCAGAAGCTGATGATGGCCCACCTTGGGGCGTTGACTGGAGCTATGAAGAAATTAGTGGTGCCAGATCCTCAGCCTTCCCTCCCTGAGCTGCAACCAGGATTGAAGGCATGACCACAGCTGAGTTAGGGACCGGAACAATGAGCAGGACAGAGACCTGGATCAAGACAGAAAACAGGACAAAGCCAAAGACAGAGACCGGGAGCAGGATCGACCTAGAGGGTCCTTTCCACAGGTCAGACTCATTCCCCGATCGGAGGCTCCTTGGAAGGGGAACACTGTATGTGTATGGAGAGGACATGACACTCACCCTCCTCACCCTCTCTCCCTTTGGAAATATCATCGACCTATCCGTGGATCCACCCTGAAACTGTGCCTTAGTCACCTATAAGAAGACAGATTCTGCAGATAAAGTTGTTGCTGAGCTTAATGGGACCCAAGTAGAATCTGTGCAGGTCAAAGTCAACATAGCCTGAAAACAGACCATGCTGGACGCTGCTACTGGCAAATATGTCTGGGGCTCCCTTGCTGTCCAGAACAGCCCTAAGGGTTGCCACCAGGACAAGAGGATCCAGATTTTGTATAGTGATGATCTATAAGAAACCTTGTGGATGGCTTGTAGTTCATGAAACTGCATTCCTTATGCCTCATATGCCCCCAAGCTAGTTTCAGTAAAATCCTGGGATAGAAACTTTTCA
>XM_006255922.3
CCCGCGCGCAGCAGCCCGCGCGGCGGCGCCGGAGACCGCGGGCCCGGGCGCCGCCCCCTCAGGTGAGGGCTTCGTCTCACATCCTTCGCGCCTTCCCCGCGCGGCCCCTGGTTCTTCTTCCTCCTCCTCTGGTTGCCCAGATAGCGCTGCGCGGGCCCGGCCGCCTTCTCTGCCCACCGGACCCCGAGGTTGGCTGACCTAACCCCATTGGGCATGGGGGTCGGGAGCCATCGCCTTGGCGTCGCAGGGAGTGCTTTTCCTTCTCCGGGCTGAGGAGCCAACATGTTGGTGATACCTCCGGGGCTGAGTGAAGAGGAAGAGGCACTACAGAAGAAATTCAACAAACTCAAGAAAAAGAAAAAGGCGTTGCTGGCTCTGAAGAAGCAAAGCAGCAGTGGTACAGCGAGCCAGGGCGGTGTCAAGCGCTCACTGTCAGAGCAGCCTGTGGTGGATACTGCCACAGCAACAGAACAGGCCAAACAGCTGGTGAAGTCAGGAGCTATCAGTGCCATCAAGGCTGAAACTAAGAACTCAGGCTTCAAACGTTCTCGGACCCTGGAAGGGAAGTTAAAGGACCCAGAGAAGGGGCCTGTCCCCACCTTCCAGCCGTTCCAGAGGAGCATGTCTGCTGACGAGGACCTACAGGAGCCATCCAGACGGCCCCAAAGGAAATCTCTGTATGAAAGCTTTGTGTCTTCTAGTGATCGGCTTCGGGAACTGGGACAAGATGGAGAAGAAGCAGAGGCCCCTGGGGCTGGTGAAGGCCCACCTCGAGGTTTTGACTGGAGCTATGAAGAACACAGCGGTGCCCGATCCTCAGCCTCCCCTCCCCGAAGCCGCAGCCGGGACAGAAGTCATGATCGgagccgagatagggaccgggacaaagaacgagacagagaccgggatcgagacagagaacgggacaaagacaaagacagagaccgggaccgggacagagacaaagagcgggacagagacagggaccgggagcgagaccgagaGGGCCCTTTCCGTAGGTCAGACTCATTCCCCGAACGGAGGGCCCCTCGAAAGGGGAACACTCTGTATGTGTATGGAGAGGACATGACGCCCACCCTCCTCCGAGGGGCCTTCTCTCCCTTTGGAAATATCATCGACCTCTCCATGGACCCACCCAGAAACTGTGCCTTCGTCACCTACGAGAAGATGGAGTCAGCAGATCAGGCTGTTGCTGAGCTCAATGGGACCCAGGTGGAATCTGTGCAGCTCAAAGTCAACATAGCCCGAAAACAGCCCATGCTGGACGCTGCTACTGGCAAATCTGTCTGGGGCTCCCTTGCTGTCCAGAACAGCCCCAAGGGTTGCCACCGGGACAAGAGGACCCAGATTGTGTACAGTGACGATCTATAGGAAACCTTGTGGATGGCTTCTAGGACATGAAGCTGGATTCCTTGTGCCTCATATGCCCCCAAGCTGGTCTCAGTAAAATCCTGGGGTAGAAGCTTTTCA

Publications

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