Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Sephs1P1
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Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr17). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chr1:198720237-198720410  UCSC
Strand -
Parental Sequence NM_001104630.1
Parental seq. overlap 139 bp
Parental seq. overlap (%) 2.7%
Genomic Region Intergenic
Retrocopy Summary Sephs1P1, located on chr1:198720237-198720410, is a retrocopy of the parental gene Sephs1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Sephs1
Full Name selenophosphate synthetase 1
Also known as -
Coordinate chr17:77312562-77340934
Strand -
Gene summary Predicted to enable protein heterodimerization activity; protein homodimerization activity; and selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to be located in nuclear membrane and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human SEPHS1 (selenophosphate synthetase 1). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus SEPHS1P1
Crab-eating macaque Macaca fascicularis SEPHS1P4
Rhesus Macaca mulatta SEPHS1P4
Marmoset Callithrix jacchus SEPHS1P4
Velvety free-tailed bat Molossus molossus SEPHS1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

This retrocopy transcript is not present in the database for expression quantification

Related Sequence

>Sephs1P1
CACCAATGGCTGGATAATCCTGAGAAATGGAATAAAATCAAGATGGTGGTTTCCAGAGAGGAAGTAGAGCTAGCCTATCAGGAAGCTATGTTCAACATGGCTACTCTGAACAGGACTGCTGCTAGCTTGATGCACACTTTTAATGCTCACGCAGCCACGGATATCACAGGCTTT
>NM_001104630.1
cacggagccgctccggccaccggcccgccgccTTAAAGGGAGGTGGCCGCTCTTAAAGGGACCCTCGCGCGCCCGGCCGGCGGGAGCGCGGCGGCCCGGTTCCCGGAGGGCCGCACCCAGCCTAGGCCGAGCTCCACGCGGCGTCCAAGCGCGGGGCCGTGCCGCCGCCACCGGGAGCAGCATTTTTATTCAGGCGACGCTTAAGGGAGCCCGGCGCGCCCGGTGCATTGTGGGAGCGCCGCGGCCCGTTTTCGGGAGGAGGCGGAGGGCGCAAAGCGAGCCGGTGGATCACAAGTAGAAAGCCCATTGGATCCAGAGAAAGGGAGGGGAGGGGCTGAACTGTGAAGAGTGCGGCCCCAGAACCATGTCTACTCGGGAGTCCTTTAACCCGGAAACTTATGAATTGGACAAGAGCTTCCGGCTAACCAGGTTTACTGAACTGAAAGGCACAGGCTGCAAAGTGCCCCAAGATGTCTTGCAGAAATTGCTGGAATCTTTACAAGAGAACCACTTCCAAGAAGATGAGCAGTTTCTGGGAGCGGTTATGCCACGACTTGGCATTGGGATGGATACTTGCGTCATTCCTCTGAGGCACGGTGGTCTCTCCTTGGTTCAAACCACAGATTACATTTATCCTATCGTGGACGACCCTTACATGATGGGCAGGATAGCGTGTGCCAATGTCCTCAGTGACCTCTATGCGATGGGTGTCACAGAATGTGACAATATGCTAATGCTCCTTGGAGTCAGTAATAAAATGACTGACCGGGAAAGGGATAAAGTGATGCCGCTAATTATACAGGGTTTTAAAGATGCGGCCGAGGAAGCGGGGACCTCTGTAACGGGGGGCCAAACGGTATTGAACCCCTGGATTGTTCTGGGAGGAGTCGCCACAACTGTCTGCCAGCCCAATGAATTTATCATGCCAGACAACGCGGTGCCGGGGGACGTGCTGGTGCTGACCAAACCCCTGGGGACGCAGGTTGCAGTGGCTGTGCACCAGTGGCTGGATATTCCTGAAAAATGGAATAAAATTAAGCTCGTGGTCACCCAAGAAGACGTAGAGCTGGCATACCAAGAGGCAATGGTGAACATGGCGCGGCTCAACAGGACAGCTGCAGGCCTCATGCACACGTTCAATGCTCATGCAGCCACTGATATCACAGGCTTCGGGATTCTGGGCCATGCACAGAACCTGGCCAAGCAACAGAGGAACGAGGTGTCGTTTGTGATTCACAATCTTCCCGTGCTAGCCAAGATGGCCGCTGTGAGCAAAGCCTGCGGAAACATGTTCGGCCTAATGCATGGGACCTGCCCAGAGACGTCAGGAGGCCTGCTAATCTGCCTACCGCGTGAGCAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCCCCCAAATATGGCGAAGGCCACCAAGCATGGATTATTGGGATTGTAGAGAAGGGCAACCGCACAGCCAGAATCATCGACAAACCTCGGATTATTGAAGTCGCACCTCAAGTAGCCACGCAAAACGTGAATCCCACACCTGGTGCCACCTCCTAATCCAGACAGAAATAGCTATTGATTTTGTCTTTACATAGATCTATTTCCTTTATCATCACTTCAATTAAAGACTCTAAGAACAACAAATCTCATTGTGTCTACACAGCTGGTGACCCTAGGTCGTTTTATGAGTGGATGCAATTAATAAAATGAAATCCATGGCCTTCTTTTCCTGTTACATTAACTGAAGATGCACCCAACCTCCAGGCAGCTTCTGAGTTGAGAATGATATTGTTATCCGATACCGTTGATTCATTTTGAATCTTTAGATGCGCATCTCTTGCCGCACAGGCGCTCTCTAAAGGTGCTTTTCTGCCACAGGCACTGCTGAGAGGAATACCACTAGCAGTCTGTCTTCTCATTCTACCTATCACATCAGTCTGGTCTGTTTTCAAGTGTCTCGGTTGACACTCTAGAAAGACAGAATTGGTAAGTCACGTGACGGCCTCCCGTAGTCAGGGTTGCAAGGCTCCTTCGAGGGTTTGGTTTGTAAGTTGAGTCTAATACCTCGGGGGCATTTCTTCACCCAGTAGCCCACTCGGTTCAGGATGGCAGGTGCTTTGCTTGGCACGGTAAGCACGACTTGGCAGTAATAACCGTTGATGGTCTTTACCGTAGGAGAAAGGATACTTTCTGCAATGTTCATAGTTCTATAGCACGACAAGGAACTGCCTTCGATAGGGGCTTCGTGTATAGTACTCATTTATAATTCAGTATCTAATTTACTTCGCAAATGATTTTTAAATATGATCAATACTAAAGACTGTTCTGTGGATGGTAGTGTTTAATACATTTTATATTTTGTATAGTGATTTCAGGCCTCTTGTTTAAAATCAGCAGCTCTTTAGCCCAATTCTTAGCATCATTTTGTCCTTGCGCCCGTACCTTTTTGTGCACGCATTTTGTGATTTGTGTTAAAAACCTGCATTGCCAACGTTGCAGCTCCAACATAAAAGTTGTTATTCAAATAAATATTTAATTTTTTTAATTGCTCTTGTATAATCAGATGCCCTTTTTAGTATTATTTTAGAAGCATCTGGGAGGGTTTTGCCTAAAATACAATTTATTGGGGAAACTAGATTTTAGTTTTATAAACTTTTAAGTCTTTCATGGGACCTATATTTTCTTGAATTAAATTTTGTAGTTCTAGAACAAATAGGCAATCTACAAAGGTGTTATCTGTGTTTCTTAAAAACAGGCTTCCTTATCTTCCTTATCTGTTAAGCAGCTGGGGGATTCCCGTCTTTAAGCACAAGGGCACTGGGTCCTCAAATGCCTGTCTTCAAAAGAGAAAAAGCACCAGTCTTCAGGTTTCACGGGCTTCCTACTAACAGGCCCCAAAGCTAAGCTTTGTAAACTCACCCAACCTTCTCAACACGGAACACCAGGAAACCACCACTGGACCAATGGAGCGCCCAGAAGGAAGAGGCTGCCACATGCTTGTGTCCCTGGGAGCCACGCTACAGCTGGAACAGAACCACCGAGTCTGGCCCCAGAGAGGAAGCTGTCACAGAAGGACACTAATTGGACACTATAGGAAATGATATGATGTTGGTCCTTGAAAGTATGCACCAGTCATCTGCAAAATAAAACGTGTTGGAACCCTCTGAGTGCAGAAAGCTTACTGTAGGACTTACTTCTGTCTTGTTTTTTCTTAAACAGTAGGTGAAATTGGAGCTAACTGTACATTCTGTCCCCCAAAGCCGCTACTTTTTTTGTGGCAAGACTGTGGAGAGGAAATTAGATGGCTCATGTCCTGAGCAAATCATCTTTAAAGATTCATGTAAGGAGGAAAGGCCAGGGATTTAAGATCCTTGGAGTTGTGATCTAGGAAAAGCCCTTGTCTTGACTAGCATCACGGTGCTCAGAAACCCATGAACTAGAATCACACAGGCATTTGTGGGGGCATTCCTGCCCTTCCCCAAGACCCAGAGTCAATTGTGGCTAGGGAACCAGGTCCTCCATCTTGAGAATGTCCCCTCTAGGGCTTTGCATAATAAACCTTGAGAACCGCTGACCTCAAAAGGAATGTTGGGGCATGTGTGTAACAAGTGGGGCTGTCAGGGATCCCTTTAGTCTTAGCCATTCCTTTTATTTCCTGTGGTGCTCTGTGTGTGTGACTCTAAAGTTCTTGACTCAAGTGACTGTCATTGTTTAGTAAGTTTGGCAAAGTCTACATGGAACTCAATTTATCCAATGGTCACTCTTCTAAAATCCACACTGGACAGTGCTCCTACAGACCCTGGACCCTGCTGGTGTCCAGTCTTCTCATAGAACAAAGGAACATTGAAGTTCAGTGGGTTGTTTCCACAGCTGTGTTGAAGCAATAACATACTTGTTCTTTTTGGCTCAGTATTTTGAAACCTCCAAGTCTTCCAAATTTCGCGTGAGTTGTAATGAATAAGTGGAAGTGTTTTCATTGTTCTGATGTGTGAACGAGCCCCTTGCATCTTCCAGCATTGCCTTTAAAATTGTTCTgagctggtaagatggctcagtgggtacagtggcttgtctcaaaagcctgagttccatccgcttccagaacccatgtagaggtgcaaagaaaagtggcctgcattgtGCGGCAAATGTACTTATGCACCTAGCAATAAATACATTAATATTTAGTTGTCAGAGTTCTAGATCTTCGTCTTATTCTGTAGAAACAGAAATAATAGCTATACTGGTTTATTTTTACAGACGCTTAGCACAGGCAGGAGTTTGCGAGACCTGATGATGGGCATGCACACAACCCTGCCTGAGATGTTCATTCTCACATCTGACCAGGCGCTCACACAGCATACTCGCTTCCAATAGTCACGTATCCTGTTCTCATTAAGAATCCACATTAAGGATTCTAGTCATGAAACCCCAGAGACCACGGTGAAAATCTAGAGTCCTGTTGCAATTTGATGATTTGCCTTTGTTTAAGTTGTGCTTTGAATGAGACCAGGAATGGGTGGATTAGACCAGCCCTGAGTCAAGTCACTTGGGCATTTCTAGGCATTCAGACATGATCAAGAACCACTGGAAGCCAAACTCGTGCAATAGAGTGGTTGTGGTCTGTCTGGTGAGTATGGGGTATACAGGTCTGTGCACTTTCCTGTACTTGATAGGCCTCAAATGTCAGCACTCTTGGTGTTGATGGGCCTTGCTAGGTCGTGCTGCCTTTAAAGGGAGTTCAATGCTCAGGAGAAAGAAGAGCATGTAATGAAGCCCGCCAAACTATGGGgctggacccaatgacacagggctgtaatcccatactcaggaggctgaagcaaggggaccacacgttcaaagtctgcctgggctacccaataaagccctgtttTGCTCTCCAGCACAAAGGATTAAGAAAAGTccgagagtacagctcagttgtagagtacttgcctagcattcacaaggtcccgggtttagtccacagtaccagtaaaaaccaaacttgttgAAAACAAGCTTAAAAGGCACTAGTTTACTATAATTACGATGTGATCATGGGTCAGGGCTGATGGAGCCTCCATTATTGTATTTCAGGAATAAAAACATGTATGTGGAAATATATAGAATGTAATGTTTATCACCCCAGCATATTTTGCACAGTTCTAAAGCAAAATTATATAAAATTCGATGTCTAGGAGATATTCCTGGGTTTGGGTTCACTTTGGGAAATAAAACTATAATAGTTTGAACTTC

Publications

PMID - Link Title
No publications available for this retrocopy