Retrocopy Name | Smarca2P2 |
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Species | Rattus norvegicus | |
Coordinates | chr5:88199770-88201216 UCSC | |
Strand | + | |
Parental Sequence | NM_001004446.1 | |
Parental seq. overlap | 1232 bp | |
Parental seq. overlap (%) | 20.8% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | Smarca2P2, located on chr5:88199770-88201216, is a retrocopy of the parental gene Smarca2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Smarca2 |
Full Name | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
Also known as | - |
Coordinate | chr1:244615812-244783736 |
Strand | + |
Gene summary | Enables chromatin binding activity. Involved in spermatid development. Predicted to be located in chromatin; intermediate filament cytoskeleton; and nucleoplasm. Predicted to be part of SWI/SNF complex; nBAF complex; and npBAF complex. Predicted to be active in nucleus. Orthologous to human SMARCA2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>Smarca2P2 |
GAGTTCAGCGTGACAGCTCAGTGAAGTCTTCATTCAGTTACTTTCCAGAAAAGAGTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGACTTCAAAAAGATAAAGGAAAGAATCCGTAATCATAAGTACCGAAGACTGGGAGACCTGGACAAAGATGTCATGTGTCTCTGTCACAATGAACAGACATTCAACTTGGGAGGATCCCAGATCTACGAAGACTCCATTGTCCTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAGTCAGAGTCAGAGGCAAAATCTGTGAAGGTGAAAATCAAACTGAATAAAAAGGAAGAGAAAGGCCGACCGAGGCAAAGCCAAACCCGTTGTGAGCGATTTTGACAGCGATGAGGAGCAGGATGAGAAAGAACAGTCAGAAGCAAGTGGAACTGATGACGAGTGAACAGCCTGGACATGAGCTACCCATGGCAGGGGCAGCGGCGGCGGGCAGCCGAACTGAAGGCTTTCTTCTCCCTCTCCTTCCTCCCCAGTGAGTTCACTTGCCATTTGGGCACACTGGGTTATTTCTCCATTCTCACTGTCATCTAGAACTAGCTTTAGGGTAGTGCCAGACAAACATATGATATCATGGTATGGATATTTGTAACATATTGTGACCAAATGGGCCTCAAAGATTCAAAGATTAAAAACAAAAAGCTTTTGATGGGAAAGATGTGGGTGGATAGTATATTTCTACAGATGGGTCGAGTCTGGTAGCAGTTTGGTAGGCTCGGTTCTGCCATCTGTTCTGATAGGAAGATTTTCATCTTCTGCAGCACCGATGGCCAGGGAGAACTGTTCAAAGCCACTGGTTATTTTATTTTTCATCAGGCGATTTTCAAGATTTTCATTTGTTTCAGTATTGTTGGGGACACTGTGGTACATATAAGCGACTTTACTAGTGACAATTGTACAGTAGTTAGATATCACCTACATATGCATTTTTCCATTTTATGCTCTATGATCTGAAGAACAACAAAAAAAAAGCTTTTTGACATGTATAAGATTTATGTCTACTGTAAACATTGCTGAAACTTTTTTTTTTGGTTCTCGTTTTATTGACAACGCTATTGAATATTACAGTGTCTAGAGTGTCCCAGATAGCTTCTTTTGTCCACCCGATCGCCTGTGTTACCAATGTGTATGGTTTCCTTCTCCCTAAAGTGTACTTAATCTTTGCTTTCTTTGCACAATGTCTTTGGTTGCAAGTCATAAGAGCCTGAGGCAAATAAAATTCCAGTAATTTCC |
>NM_001004446.1 |
GGGACGGCTGTCATCAATGAAGTCATATTCATAATCTAGTCCTCGCTCCCTCTGTTTCTGTACTCTGGGTGACTCAGAGAGGGAAGATTCAGCCAGCACACTGCTCGCGAGCAAGTGTCAGTCTGCTGACTGGCAGAGTCAGGAGACGTAGATGGCCACACCCACAGACCCAGCTGCAATGCCCCATCCTGGGCCCTCCCCGGGGCCTGGACCTTCTCCTGGACCAATTCTGGGGCCTAGTCCAGGACCAGGACCGTCCCCAGGTTCTGTGCACAGTATGATGGGGCCCAGTCCTGGACCTCCCAGTGTCTCACATCCTATGTCGACAATGGGCTCGGCAGACTTCCCACAGGAAGGCTTGCACCAGCTGCATAAGCCCATGGATGGGATACATGACAAGGGGATTGTAGAAGATGTCCACTGTGGATCCATGAAGGGTACCAGTATGCGCCCACCACACCCAGGAATGGGCCCTCCACAGAGCCCAATGGATCAGCACAGCCAAGgttatatgtcaccacatccatctcctTTGGGAGCCCCAGAGCATGTCTCCAGCCCTATATCTGGAGGAGGCCCAACCCCACCCCAGATGCCGCCGAGCCAGCCAGGGACACTCATCCCAGGAGATCTGCAGGCCATGAACCAGCCTAACAGAGGTCCCTCGCCTTTCAGTCCCGTACAGCTGCATCAGCTTCGAGCTCAGATTTTAGCTTACAAAATGTTGGCCAGGGGCCAGCCCCTCCCTGAAACTCTGCAGCTTGCAGTCCAGGGAAAAAGGACCTTGCCTGGTATgcaacagcaacagcagcagcagcagcaacaacaacagcagcagcaacaacagcagccccagcagccccagcagcctcagcagcagacacaggcacagccacagcagcagcaacagcagcagcagcagccgccagcTCTTGTTAGCTACAATAGACCATCTGGCCCTGGGCAGGAGCTGCTGATGACTGCTCAGAACACCCAGCAGAAGCTGTCGgcacccgcacccagcggccgaccttcacctgcacctccagcggccacccAGCCCACGGCCACAGCAGTGCCTGGGCCCTCGGTGCAGCAGCCTGCCCCAGGGCAGCCATCTCCCGTCCTGCAGCTGCAACAGAAGCAGAGCCGCATCAGCCCCATCCAGAAACCGCAAGGCCTGGACCCCGTGGAGATCCTGCAGGAACGGGAGTACAGACTTCAGGCTCGCATAGCTCATAGGATACAAGAACTGGAAAGTCTGCCTGGCTCCTTGCCACCAGATTTACGAACCAAAGCAACCGTAGAGCTGAAAGCACTTCGCTTGCTCAACTTTCAACGTCAGCTGAGACAGGAGGTGGTGGCCTGCATGCGAAGGGACACCACCCTGGAGACAGCCCTCAACTCCAAGGCGTACAAGCGGAGTAAGCGCCAAACCCTGCGAGAGGCACGCATGACGGAGAAACTGGAGAAGCAGCAGAAGATAGAGCAGGAGAGGAAACGCCGCCAGAAGCACCAGGAATACCTGAACAGTATTTTGCAACATGCAAAAGATTTTAAGGAATACCACCGGTCTGTGGCTGGGAAGATCCAGAAGCTGTCCAAAGCAGTGGCGACTTGGCATGCTAACACCGAAAGGGAGCAGAAGAAGGAGACGGAGCGGATCGAGAAGGAGAGAATGCGAAGGCTGATGGCTGAAGATGAAGAGGGCTACAGGAAGCTCATCGACCAAAAGAAAGACAGACGCCTGGCCTACCTATTGCAGCAGACTGATGAGTATGTCGCCAATCTGACCAACCTGGTTTGGGAGCACAAGCAGGCCCAAGCAGCCAaagagaagaagaagaggaggaggaggaggaagAAGGCCGAAGAGAATGCAGAGGGAGGGGAGCCTGCCCTGGGACCAGATGGAGAGCCAATAGACGAAAGCAGCCAGATGAGTGACCTGCCTGTCAAAGTGACGCACACGGAAACTGGCAAGGTCCTCTTTGGACCAGAAGCACCCAAAGCAAGTCAGCTGGACGCCTGGCTGGAGATGAATCCTGGTTACGAAGTGGCACCCAGATCGGACAGTGAAGAGAGTGAATCAGACTATGAGGAAGAGGATGAAGAAGAAGAGTCCAGTAGGCAGGAAACAGAGGAGAAGATACTGCTGGATCCAAACAGCGAAGAAGTTTCCGAAAAGGACGCCAAGCAGATCATTGAGACTGCGAAACAGGATGTGGACGACGAGTACAGCATGCAGTACAGTGCCAGAGGGTCCCAGTCCTACTACACGGTGGCTCACGCCATCTCCGAGAGGGTGGAGAAGCAGTCTGCCCTCCTCATTAATGGCACCCTGAAGCACTACCAGCTCCAGGGCCTGGAATGGATGGTTTCCCTGTATAATAACAATCTGAATGGAATCTTAGCTGATGAAATGGGGCTAGGCAAGACCATCCAGACCATTGCACTCATCACGTATCTGATGGAGCACAAAAGGCTCAATGGCCCCTACCTCATCATCGTCCCCCTCTCGACTCTGTCTAACTGGACATATGAATTTGACAAATGGGCTCCTTCTGTGGTGAAAATTTCCTACAAGGGTACCCCTGCCATGCGACGCTCCCTTGTTCCCCAGTTACGGAGTGGCAAATTCAATGTCCTCCTGACTACCTACGAGTACATTATAAAAGACAAGCACATTCTTGCAAAGATTAGGTGGAAATACATGATAGTGGACGAAGGCCACCGAATGAAGAACCATCACTGCAAGCTGACCCAGGTCCTGAACACACACTACGTGGCCCCCAGAAGGATCCTTCTGACTGGGACCCCGCTGCAGAATAAGCTCCCCGAACTCTGGGCCCTCCTCAACTTCCTCCTCCCTACAATCTTCAAGAGTTGCAGCACATTTGAGCAGTGGTTTAATGCTCCGTTTGCCATGACCGGCGAAAGGGTGGACCTGAACGAAGAAGAAACCATTTTGATCATCAGGCGTCTACACAAGGTGTTGAGACCCTTTTTACTGAGGAGGCTGAAGAAAGAGGTTGAGTCTCAGCTTCCAGAAAAGGTTGAGTATGTGATCAAGTGTGATATGTCCGCTCTGCAGAAGATCCTGTACCGTCATATGCAGGCCAAGGGCATCCTCCTCACGGACGGGTCTGAGAAGGATAAGAAGgggaaaggAGGTGCCAAGACGCTTATGAACACTATCATGCAGCTGCGAAAGATATGCAACCACCCATATATGTTTCAGCACATTGAGGAATCCTTTGCTGAACACCTGGGCTATTCGAATGGGGTCATCAATGGGGCCGAGCTGTATCGGGCCTCAGGAAAGTTTGAGCTACTTGATCGTATTCTGCCCAAATTGAGAGCGACTAACCACCGCGTGCTGCTTTTCTGCCAGATGACGTCACTCATGACCATCATGGAGGATTACTTTGCTTTTCGGAACTTCCTTTACCTGCGCCTTGATGGCACCACCAAGTCTGAAGATCGTGCTGCTTTGCTGAAGAAATTCAATGAACCTGGGTCCCAGTATTTCATTTTCTTGCTGAGCACACGAGCTGGGGGCCTGGGCTTAAATCTTCAGGCCGCAGACACTGTGGTCATCTTTGACAGCGACTGGAATCCTCATCAGGATCTGCAGGCCCAAGACCGAGCTCACCGCATTGGCCAACAAAATGAGGTCCGGGTGCTGAGGCTTTGCACCGTCAACAGTGTTGAGGAAAAGATTCTCGCGGCTGCCAAGTACAAGCTGAATGTGGACCAGAAGGTTATTCAGGCGGGCATGTTTGACCAGAAGTCATCCAGCCATGAGCGGAGGGCATTTCTACAGGCCATCCTGGAGCACGAAGAGGAGAATGAGgaagaagaTGAGGTACCAGACGACGAGACCCTGAACCAGATGATTGCTCGCCGGGAAGAAGAGTTTGATCTTTTTATGCGCATGGACATGGACCGGCGGAGAGAGGACGCCAGAAACCCGAAGCGCAAGCCTCGCTTGATGGAGGAAGATGAGCTGCCCTCCTGGATAATTAAGGATGATGCTGAAGTGGAAAGGCTCACCTGCGAAGAGGAGGAGGAGAAGATATTTGGGAGGGGCTCTCGCCAGCGCCGGGATGTGGACTACAGCGATGCCCTCACCGAGAAGCAGTGGCTCAGGGCCATCGAAGACGGAAATTTGGAAGAAATGGAAGAGGAGGTACGGCTGAAGAAGAGGAAAAGACGAAGAAACGTGGATAAAGATCCCGTGAAGGAAGATGTGGAAAAAGCAAAGAAAAGAAGAGGCCGCCCCCCAGCTGAGAAGTTGTCACCAAATCCCCCCAAACTGACGAAGCAGATGAACGCCATCATTGATACTGTGATAAACTACAAGGACAGGTGTAACgtggagaaggtgccctgtaattctcagttggaaatagaaggaaaCAGTTCAGGGCGACAGCTCAGTGAAGTCTTCATTCAGTTACCTTCCAGAAAAGAGTTACCAGAATACTATGAATTAATTAGGAAGCCAGTGGATTTCAAAAAGATAAAGGAAAGAATCCGTAATCATAAGTACCGAAGCCTGGGAGACCTGGAGAAAGATGTCATGCTTCTCTGTCACAATGCACAGACATTCAACTTGGAAGGATCCCAGATCTACGAAGACTCCATTGTCCTCCAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAagaagaagagagtgaggaggaaagcaatgaggaggaggaggaagaggatgaagaggagtcagaggcagaggCAAAATCTGTGAAGGTGAAAATCAAACTGAATAAAAAGGAAGAGAAAGGCCGGGATACAGGGAAGGGCAAGAAAAGGCCAAACCGAGGCAAAGCCAAACCTGTTGTGAGCGATTTTGACAGCGATGAGGAGCAGGATGAGAACGAACAGTCAGAAGCAAGTGGGACTGACGACGAGTGAACAGCCTGGACATGAGCTTCCTGCGGCAGCGGCTGCGGCAGGCAGCCAAACCGAATGCTTTCTTCCCCCTCTCCTTCCTCCCCAGTGAGTTCACTTGCCATTTGGGCACACTGGGTTATTTCTCCGTCCTCACTGTCATCTAGAACTAGCTTTAGGGTAGTGCCAGACAAACATATGATATCATGGTGTAAAAAAAAAAAAAAAGAGACGCGCGCGTGTacacacacacacacacacacacacacacacacacacacacacacacacacacGGATATTTGTAACATATTGTGACCAAATGGGCCTCAAAGATTCAAAGATTAAAAACAAAAAGCTTTTGATGGGAAAGATGTGGGTGGATAGTATATTTCTACAGGTGGGTCGAGTCTGGTCGCAGTTTGGTGGGCTCGGTTCTGCCATCTGTTCTGATGGGAAGATTTTCATCTTCTGCAGCGCCGATGGCCAGGGGGAACCGTTCAAAGCCACTGGTTATTTTATTTTTCATCAGGCGATTTTCAAGATTTTCATTTGTTTCAGTATTGTTGGGTTTTTGGGGttttttgtttgtttgtttgttttttgtttttttttttACACTGTGGTACATATAAGCGACTTTACTAGTGACAATTGTACAGTAGTTAGATATCACCTACATATACATTTTTCCATTTTATGCTCTATGATCTGaagaacaacaacaacaacaaaaaaaaGCTTTTTGACTTGTATAAGATTTATGTCTACTGTAAACATTGCTGAAACTTTTTTTTTTTTTTGGTTCTCGTTTTATTGACAACGCTATTGAATATTACAGTGTCTAGAGTGTCCCGGATGGCTTCTTTTGTCCACCCGATCTCCTGTGTTACCGATGTGTATGGTCTCCTTCTCCCTAAAGTGTACTTAATCTTTGCTTTCTTTGCACAATGTCTTTGGTTGCAAGTCATAAGAGCCTGAGGCAAATAAAATTCCAGTAATTTCCAA 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PMID - Link | Title |
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No publications available for this retrocopy |