Retrocopy Name | Sod2P1 |
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Species | Rattus norvegicus | |
Coordinates | chr5:65611495-65612265 UCSC | |
Strand | - | |
Parental Sequence | NM_017051.2 | |
Parental seq. overlap | 715 bp | |
Parental seq. overlap (%) | 34.6% | |
Genomic Region |
Intergenic |
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Retrocopy Summary | Sod2P1, located on chr5:65611495-65612265, is a retrocopy of the parental gene Sod2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes. |
Gene Name | Sod2 |
Full Name | superoxide dismutase 2 |
Also known as | MnSOD |
Coordinate | chr1:47914757-47921587 |
Strand | - |
Gene summary | Enables several functions, including identical protein binding activity; manganese ion binding activity; and superoxide dismutase activity. Involved in several processes, including hydrogen peroxide biosynthetic process; negative regulation of membrane hyperpolarization; and positive regulation of hydrogen peroxide biosynthetic process. Located in mitochondrial nucleoid. Used to study esophagus adenocarcinoma; hypertension; intestinal disease; and myocardial infarction. Biomarker of several diseases, including adult respiratory distress syndrome; artery disease (multiple); bladder neck obstruction; congenital diaphragmatic hernia; and hyperhomocysteinemia. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); autoimmune disease (multiple); lipid storage disease (multiple); liver disease (multiple); and optic nerve disease (multiple). Orthologous to human SOD2 (superoxide dismutase 2). [provided by Alliance of Genome Resources, Apr 2022] |
Species | Scientific Name | Retrocopy | |
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Human | Homo sapiens | Without Homology |
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Chimpanzee | Pan troglodytes | Without Homology |
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Bonobo | Pan paniscus | Without Homology |
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Gorilla | Gorilla gorilla | Without Homology |
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Orangutan | Pongo abelii | Without Homology |
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Gibbon | Nomascus leucogenys | Without Homology |
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Green monkey | Chlorocebus sabaeus | Without Homology |
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Crab-eating macaque | Macaca fascicularis | Without Homology |
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Rhesus | Macaca mulatta | Without Homology |
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Baboon | Papio anubis | Without Homology |
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Golden snub-nosed monkey | Rhinopithecus roxellana | Without Homology |
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Marmoset | Callithrix jacchus | Without Homology |
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Mouse lemur | Microcebus murinus | Without Homology |
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Mouse | Mus musculus | Without Homology |
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Chinese hamster | Cricetulus griseus | Without Homology |
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Rabbit | Oryctolagus cuniculus | Without Homology |
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Pig | Sus scrofa | Without Homology |
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Cow | Bos taurus | Without Homology |
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Sheep | Ovis aries | Without Homology |
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Dolphin | Tursiops truncatus | Without Homology |
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Horse | Equus caballus | Without Homology |
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Dog | Canis familiaris | Without Homology |
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Panda | Ailuropoda melanoleuca | Without Homology |
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Cat | Felis catus | Without Homology |
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Pale spear-nosed bat | Phyllostomus discolor | Without Homology |
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Velvety free-tailed bat | Molossus molossus | Without Homology |
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Greater mouse-eared bat | Myotis myotis | Without Homology |
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Kuhl's pipistrelle | Pipistrellus kuhlii | Without Homology |
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Greater horseshoe bat | Rhinolophus ferrumequinum | Without Homology |
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Egyptian rousette | Rousettus aegyptiacus | Without Homology |
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Sloth | Choloepus didactylus | Without Homology |
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Tasmanian Devil | Sarcophilus harrisii | Without Homology |
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Opossum | Monodelphis domestica | Without Homology |
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Platypus | Ornithorhynchus anatinus | Without Homology |
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Chicken | Gallus gallus | Without Homology |
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Turkey | Meleagris gallopavo | Without Homology |
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Zebra Finch | Taeniopygia guttata | Without Homology |
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Budgerigar | Melopsittacus undulatus | Without Homology |
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Painted Turtle | Chrysemys picta | Without Homology |
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Lizard | Anolis Carolinensis | Without Homology |
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Frog | Xenopus tropicalis | Without Homology |
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Zebrafish | Danio rerio | Without Homology |
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Drosophila | Drosophila melanogaster | Without Homology |
>Sod2P1 |
CAAGCACTGCCTCCCCCACCTGCCTTATGACTATGGCGTGCTGGAGCCGCACATTAACGTGCAGATCATGCAGCTGCACCACAGCAAGCACCACACGACCTAGGTGAACAATCTGAATGTCACCGACAAGAAGTACCACTAGGCGCTGGCCAAGGGAGATGTTAAAAATCAGGTTGCTCTTCAGCCTGCACTGAAGTTCAATGGTAGGGGACATATTAATCACAGCATTTTCTGGACAAACCTGAGCCCTAAGTGTGGTGGAGAACCCAAAGGAGAGTTGCTGGAGGCTATCAAGTGTGACTTTGGGTCTTTTCAGAAGTTTAAGGAGAAACTGACAGCTATGTCTGTGGGAGTCCAAGGTTCAGGCTGGCTTGGCTTCAATAAGGAGCAAGGTCGCTTACAGATTGTTGCCTGCTCTAATCAGGTCCCACGGCAAGGAACAACAGGTCTTATTCCACTGATGGGGATTGATGTGTGGGAGCATGTTTACTATCCTCAGTATAAAAACATCCGACCTGACTATCTGAAAGCCATTTGGAATGTAATCAACTAGGAGAATGTTACCCAAAGATACATAGCTTGCAAGAAGTGAATCCTTTCGGCCAGGCTGTGTCAGGCTCTTGGTGGGTGTTTTGTAGTAGTGTAGAACATTGCAGCACTATGACTGAGCTGTGGTAATCTTTAATGATGTCAATCCACATATGTATAAGCATACTGTTATGATAATTTCTTAATTAAATTTGTTGTTAGGCAACTGTTTAAGAACAGTAA |
>NM_017051.2 |
CGGGCGGACGCCGCAGAGCAGACGCGCGGCTGCTAGCGAACGGCCGTGTTCTGAGGAGAGCAGCGGTCGTGGGCGCCTCAGCAATGTTGTGTCGGGCGGCGTGCAGCGCGGGCAGAAGACTGGGCCCCGCGGCCAGTACCGCGGGCTCCCGGCACAAGCACAGCCTCCCTGACCTGCCTTACGACTATGGCGCGCTGGAGCCGCACATTAACGCGCAGATCATGCAGCTGCACCACAGCAAGCACCACGCGACCTACGTGAACAATCTGAACGTCACCGAGGAGAAGTACCACGAGGCGCTGGCCAAGGGAGATGTTACAACTCAGGTTGCTCTTCAGCCTGCACTGAAGTTCAATGGCGGGGGCCATATCAATCACAGCATTTTCTGGACAAACCTGAGCCCTAAGGGTGGTGGAGAACCCAAAGGAGAGTTGCTGGAGGCTATCAAGCGTGACTTTGGGTCTTTTGAGAAGTTTAAGGAGAAACTGACAGCTGTGTCTGTGGGAGTCCAAGGTTCAGGCTGGGGCTGGCTTGGCTTCAATAAGGAGCAAGGTCGCTTACAGATTGCCGCCTGCTCTAATCAGGACCCACTGCAAGGAACCACAGGCCTTATTCCACTGCTGGGGATTGATGTGTGGGAGCACGCTTACTATCTTCAGTATAAAAACGTCAGACCTGACTATCTGAAAGCCATTTGGAATGTAATCAACTGGGAGAATGTTAGCCAAAGATACATAGTTTGCAAGAAGTGAAGCCCTTCCGCCAGGCTGTGTGTCAGGCCCGTGGTGGGTGTTTTGTAGTAGTGTAGAGCATTGCAGCACTGTGGCTGAGCTGTTGTAATCTTCATTGATGCCTATCCACATATGTGTAAGCATACAGTTATGATAATTTCTTAATTAAATGTATTGTTAGGCAACTGTTTGAGAACAGTACATACTTGGTGTGAGCTGCTCTTGATTGAACATTTTCATTAGAGGCTTGAATTGCTTGGACGCTGTCACTGTCATCATAAGGCCATCAAAGATATTCCATCTCTGTGTTGGGGCCTGTGGGGAGGCTGTAATCCTGTTCTACTGCAGTTAGGAAAAAAAATGAGTTACCCCCCCCCCCAGAATTGTTGAATAATAAAATAGAGAACTGAATAGTTCTCTTTTCTGTTAAAAATTGCTATTTTTCATAAGTAATCCTTTGTTTAGCGGATATCACCTAGTGGTCTTTATTTATGGCCACAGTTTCATAGAAACATCATTTTTTCACTTGAAACGTGTAACTAggctaaggatggatggagtggtagagcctttgcctgtcttatgtgaggccctgggctctacctcactactgaacaaaTCAACAGACCCAAGCTAGGCTCCTGACTGACAACTGTTAATTCGGAGAGGAGTGACATTGTGCCTCTGGGTTTTTTTATAGGCTGAGATGCAAAAACTGTTACCTTGTCTATTAAAACCGACTGTGTATTGTATGAAAGTGCTCAAGATGGACAAAGTATGCAGGGCCTGTCCCATGATGTCAACATGGGGACTAGGCCACAGGGCATTCAGGGAAGCCATTCAGCACCATTAATTGTGTATCTCAGGAGAACTGGACCCTGGGTGAGGTGGCACCTTTTTCAGTAGAGGCAAACGGGTTTCTGAGTGAGGTCAGTAGGGTGTCTTGAGAACATCAGTTTTCAGAGACATGTATTTTCATTTTTTCTGCAGTCTCAAGAACTTATACTCACAAGAGGGCCTTTGTATTGTTATTCAATAGAAGGACACCCTTTCCCTGACAAGGTACACAGTGTTTCTGATTGTATTCCTGTGCAGCATTTGGGTGTAGAGCTGTGCACTGTTGAAATGCCTTTGTGAATTTGCCTTTTCACATTTCGTCTCACCATCTTCCTTGTTTTCTTTACTGACTATGTAATGTTTTATCAGTTGGATATTACTGAATAGTTTGTTTGTGTTTAATTGCCTTTTATTACCAAAAAGGCTGTGGTCAGCAACCCCAGGCATGCACATTACTTCTTAATGGAGTATTTTTTAAAGGtttattttaattttaa |
PMID - Link | Title |
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No publications available for this retrocopy |