Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name Yy1P1
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr6). Each line represents a retrocopy.
Species Rattus norvegicus
Coordinates chrX:40287596-40287930  UCSC
Strand +
Parental Sequence NM_173290.1
Parental seq. overlap 280 bp
Parental seq. overlap (%) 22.7%
Genomic Region Intergenic
Retrocopy Summary Yy1P1, located on chrX:40287596-40287930, is a retrocopy of the parental gene Yy1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name Yy1
Full Name YY1 transcription factor
Also known as NF-E1|NMP-1|NMP1|UCRBP
Coordinate chr6:132702443-132726848
Strand +
Gene summary Enables sequence-specific DNA binding activity. Involved in several processes, including cellular response to interleukin-1; negative regulation of cell growth involved in cardiac muscle cell development; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear matrix. Part of transcription regulator complex. Used to study type 1 diabetes mellitus. Biomarker of type 1 diabetes mellitus. Human ortholog(s) of this gene implicated in congestive heart failure. Orthologous to human YY1 (YY1 transcription factor). [provided by Alliance of Genome Resources, Apr 2022]

Homology

Species Scientific Name Retrocopy
Mouse Mus musculus Yy1P2
Chinese hamster Cricetulus griseus Yy1_1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>Yy1P1
GTAGCATGCTCTCATAAAGGCTGTGGGAAGATGTTCAAAGATAATTCTGCTATGAGAAAGCACCTGCACATCCATGGGCCTAGAGTACATGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAGAGTTCGAAGCTGAAACGTCATCAGCTGGTTCACACTGGAGAGAAGCCCTACCAGTGTACCTTTGAAGGCTGTGGGAGACGCTTTTCCCTCGATTTCAATTTGCGCACACATGTGCGAATCCATACTGGAGACAAACCTTTTGTGTGCCCATTTGATGCCTGCAACAAGAAGTTTGCCCAGTCGACAAACCTGAAATCGCATATCTTAACACA
>NM_173290.1
ATGGCCTCGGGCGACACCCTCTACATTGCCACGGACGGCTCGGAGATGCCAGCCGAGATCGTGGAACTGCATGAGATTGAGGTGGAGACCATCCCGGTGGAGACTATCGAGACCACGGTGGTGGGCgaggaggaggacgacgacgaagacgacgaggatggtggcggcggagACCACGGTGGCGGGGGCGGCCACGGGCACGCTGGccaccaccatcaccaccaccaccaccaccaccCGCCCATGATCGCGCTGCAGCCGCTGGTCACCGACGACCCGACCCAAGTGCACCACCACCAAGAGGTGATTCTGGTGCAGACGCGCGAGGAGGTAGTGGGTGGCGACGACTCGGACGGGCTGCGCGCCGAGGACGGGTTCGAGGACCAGATCCTCATTCCGGTACCCGCGCCGGCCGGCGGAGACGACGACTACATCGAGCAGACGCTGGTCACCGTGGCGGCGGCCGGCAAGAGCGGTGGCGGGTCTTCGTCGGGCGGCGGCCGCGTTAAGAAGGGCGGCGGCAAGAAGAGTGGCAAGAAGAGTTACCTGGGCAGCGGGGCCGGCGCGGCGGGCGGTGGCGGCGCCGACCCGGGTAATAAGAAGTGGGAACAGAAGCAGGTGCAGATCAAGACCCTGGAGGGCGAGTTCTCGGTCACCATGTGGTCTTCAGATGAAAAAAAAGATATTGACCATGAAACAGTGGTTGAAGAGCAGATCATTGGGGAGAACTCACCTCCTGATTATTCTGAATATATGACAGGCAAGAAACTCCCTCCTGGAGGGATACCTGGCATTGACCTCTCAGACCCCAAGCAACTGGCAGAATTTGCCAGAATGAAGCCAAGAAAAATTAAAGAAGATGATGCTCCAAGAACAATAGCTTGCCCTCATAAAGGCTGCACAAAGATGTTCAGGGATAACTCTGCTATGAGAAAGCATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAAAGCGTTCGTTGAGAGCTCAAAGCTAAAACGACACCAGCTGGTTCATACTGGAGAAAAGCCCTTTCAGTGCACATTCGAAGGCTGCGGGAAGCGCTTTTCACTGGACTTCAATTTGCGCACGCATGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGCCCCTTCGACGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACACGCTAAAGCCAAAAACAACCAGTGA

Publications

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