Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CIAO2AP1
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr1:85689668-85690497  UCSC
Strand -
Parental Sequence XM_015142449.2
Parental seq. overlap 748 bp
Parental seq. overlap (%) 67.9%
Genomic Region Intergenic
Retrocopy Summary CIAO2AP1, located on chr1:85689668-85690497, is a retrocopy of the parental gene CIAO2A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CIAO2A
Full Name cytosolic iron-sulfur assembly component 2A
Also known as FAM96A
Coordinate chr7:40530174-40553047
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens CIAO2AP2
Chimpanzee Pan troglodytes FAM96AP1
Bonobo Pan paniscus CIAO2AP1
Gorilla Gorilla gorilla CIAO2AP1
Orangutan Pongo abelii FAM96AP1
Gibbon Nomascus leucogenys CIAO2AP2
Green monkey Chlorocebus sabaeus FAM96AP3
Crab-eating macaque Macaca fascicularis FAM96AP1
Baboon Papio anubis CIAO2AP1
Golden snub-nosed monkey Rhinopithecus roxellana CIAO2AP2
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CIAO2AP1
GGCTGCTCTCCTGGACACTGAGCAGAGTCCTGTGGCTCTCGGGCCTTTTTGAGTGAGGAGCTGCTGGGCAGCCTGGGATCATGGAAGAGAAAGCGCTAGAGGTTTATGATTTGATTCAAACTATCTGGGACCTAGAAAAGCTCAATACATTAGAAGAACTGGAATTGGTAAAGGAAAGTTACATGGAAGTTAAGGAGATAAATGAAGAAGACTATCTGGTTATTACCAAGTTTACACCAGAGTACCTCATTGATATTTGGCAATTCTTATGGGGCTGTGCTTAAGAATAAAACTTCAGCGGTGTTTACCATTTAAACATAAGTTGGAAATCTACATTTCTGAAGGAACCCACTCAACAGAAGAAGACATCAGCACACAGATAAACAACAAAGAGCAAGTGGAGGCTGCAATGGAAAACCTCAGCTTATGGGAAACTGTGGAACAGTGTGTCCTTGAACCTGACTGGTAGGTATTTTAGGAGTCACTAACCTGTAATTGATATATTTGTTTAAACTCTTTGTATAATGTCAAAGACTCACGTTTAACACATAGATGATCTGTACCTCAGATCATTTTTTAAAGGATTATTTCCAAGCAAGATTTAATTTTAAGGTAGTACCTAATTTGTTCAGTGTATAACATTCTCAGGATCTGTAACACTTAAATGATCAGACAGAATAATATTTTCTAGTTATTATGTGTAAGGTGAGTTGCTATTTTTCTGATGCTCATTCTGATACAAACACTTTTCATGTCCAATATCTACTGTGCCCAAATGTACTCAATTTAAATAATTACTCTGTAAAATAAATAAGCAGATGATTCTTGTT
>XM_015142449.2
GCTAACGAGGCCGCGAAGATTGTTTTTGTCCCGCCGAAACCGAGCAAAGCACGCTGGAACTTGTAGTCCTTGAGGCCCCTTCCTTAGGTCCTTCAAGCTACTCCGTCCGGCCCCGCCTATTCTCTGCTCTCCTGAACCTTTAGGCTCATCTCGGCCCATTTGAAGACCAGGAAGTTGATCAATCCCGAGGCTGCTGAGAGACGGTGGCGCGAGTGGGACAGTCGCCAGGGATGGCTGAGCGTGAGGATGCAGCGGGTGTCCGGGCTGCTCTCCTGGACGCTGAGCAGAGTCCTGTGGCTCTCGGGCCTCTCTGAGCCGGGAGCTGCCCGGCAGCCCCGGATCATGGAAGAGAAAGCGCTAGAGGTTTATGATTTGATTAGAACTATCCGGGACCCAGAAAAGCCCAATACTTTAGAAGAACTGGAAGTGGTCTCGGAAAGTTGTGTGGAAGTTCAGGAGATAAATGAAGAAGAATATCTGGTTATTATCAGGTTCACGCCAACAGTACCTCATTGCTCTTTGGCGACTCTTATTGGGCTGTGCTTAAGAGTAAAACTTCAGCGATGTTTACCATTTAAACATAAGTTGGAAATCTACATTTCTGAAGGAACCCATTCAACAGAAGAAGACATCAATAAGCAGATAAATGACAAAGAGCGAGTGGCAGCTGCAATGGAAAACCCCAACTTACGGGAAATTGTGGAACAGTGTGTCCTTGAACCTGACTGATAGCTGTTTTAAGAGCCATTGGCCTGTAATTGTTTGATATATTTGTTTAAACTCTTTGTATAATGTCAAAGACTCATGTTTAATACATAGGTGATTTGTACCTCAGAGCATTTTTTTAAAGGATTCTTTCCAAGCCAGATTTAATTATAAGGTAGTATCTAATTTGTTCAATGTATAACATTCTCAGGATTTGTAACACTTAAATGATCAGACAGAATAATATTTTCTAGTTATTATGTGTAAGATGAGTTGCTATTTTTCTGATGCTCATTCTGATACAACTACTTTTCGTGTCAAATATCTACTGTGCGCAAATGTACTCAATTTAAATCATTACTCTGTAAAATAAACAGATGATTCTTGTAATGA

Publications

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