Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DNAJB6P3
Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr2:150987986-150988684  UCSC
Strand +
Parental Sequence NM_001257911.1
Parental seq. overlap 611 bp
Parental seq. overlap (%) 33.8%
Genomic Region Intragenic (ZNF148)
Retrocopy Summary DNAJB6P3, located on chr2:150987986-150988684, is a retrocopy of the parental gene DNAJB6. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DNAJB6
Full Name DnaJ heat shock protein family (Hsp40) member B6
Also known as -
Coordinate chr3:183347193-183429866
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DNAJB6P7
Chimpanzee Pan troglodytes DNAJB6P4
Bonobo Pan paniscus DNAJB6P4
Gorilla Gorilla gorilla DNAJB6P4
Orangutan Pongo abelii DNAJB6P4
Gibbon Nomascus leucogenys DNAJB6P10
Green monkey Chlorocebus sabaeus DNAJB6P9
Crab-eating macaque Macaca fascicularis DNAJB6P3
Baboon Papio anubis DNAJB6P3
Golden snub-nosed monkey Rhinopithecus roxellana LOC104671759P1
Marmoset Callithrix jacchus DNAJB6P7
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DNAJB6P3
CTTCCAACAATCTGCTAAAACATGTTGAATTACTATGAAGTTCTAGGTGTGCAGAGACATACCTCACCCAAGGATACTAAAAAAACATAATGAAAACTGGCACTGAAGTGGCACCCAGATTACATTCCTGAGAATAAAGAAGAAACAGAGAGAAAATTAAAACAAGTGGCTGAGGCATGTGAGGTGCTGTAAGATGCTAAAAGATGGTACATCTATGACAGATATGGCAAAGAAGGATTAAATGGTGGTGGAGGAAGTGGAAGTCATTTTGACAGTCCATTTGAGTTTGGCTTCACATTCTGTAACCCAGATGATGTCTTCAGGGAATTTTTTTTTTGTTGGAAGGAACCCATTTTTATTTGACTTCTTTGAAGACCCTTTTGAGGACTTTTTTTTTGTAATAGGGTCCCTGAGGAAGCCAAGGGACAGAGTCATTTTTTCCACATTCAGTGGATTTCCATCTTTTGGAAGTGGATTTTCTTCTTTTGATACAAGATTTGTTACATTCAGATCACTAGGTCATGGGGGCTTCACTTCATTCTCTTCTGTGTCATTTGGTGGTAGTGAGATGGGCACTTCCAAATTGATACAAGGTTCTACTAAAATGGCTAATGGCAGAAAAATCACTACAAAGATAATTGTTGGGAATGGTCAAGAAGGAATAGAATTTGAGGAAGATGGCCAGTTAAAGTCCTTAAC
>NM_001257911.1
GGAGAAAGGAGAGAAAGGAAAGCGCGAGGAGACGCCGCCACCACCAGCGCAGCAGTGCAGGAGCTGTGAGGAGATTCGGGCAGTCACCCCGCCTTCCCTGCGTCCCGCCACCAGCCGCCTCTGTCCTCGGACCCATTCCAACAATCTCTTAAAACATGGTGGATTACTATGAAGTTCTAGGCGTGCAGAGACATGCCTCACCCGAGGATATTAAAAAGGCGTATCGGAAACTGGCACTGAAGTGGCATCCAGATAAAAATCCTGAGAATAAAGAAGAAGCAGAGAGAAAATTCAAACAAGTAGCGGAGGCATATGAAGTGCTGTCGGATGCTAAGAAACGGGACATCTATGACAAATATGGCAAAGAAGGATTAAATGGTGGAGGAGGAGGTGGAAGTCATTTTGACAGTCCATTTGAATTTGGCTTCACATTCCGTAACCCAGATGATGTCTTCAGGGAATTTTTTGGTGGAAGGGACCCATTTTCATTTGAATTCTTTGAAGACCCTTTTGAGGACTTCTTTGGGAATCGAAGGGGTCCCCGAGGAAGCAGAAGCCGAGGGACGGGGTCGTTTTTCTCCGCGTTCAGTGGATTCCCGTCTTTTGGAAGTGGATTTTCTTCTTTTGATACAGGATTTACTTCATTTGGGTCACTAGGTCATGGGGGCCTCACTTCATTCTCTTCCACGTCATTTGGTGGTGGTGGCATGGGCAACTTCAAATCGATATCAACTTCAACTAAAATGGTTAATGGCAGAAAAATCACTACAAAGAGAATTGTCGAGAACGGTCAAGAAAGAGTAGAAGTTGAAGAAGACGGCCAGTTAAAGTCCTTAACAATAAATGGTGTGGCCGACGAGGATGCCCTCGCTGAGGAACGCATGCGGAGAGGCCAGAACGCCCTGCCAGCCCAGCCTGCCAGCTTCCGCCCGCCGAAGCCGCCCCGGCCCGCCTCACTGCTCAGACATGCGCCTCACTCTCCCTATGGGGAGGAGGGCGAGCAGGACCGACCTCGGGCTCCCGGGCCCTGGGACCCCCTCGCGTCCGCAGCAGGATTCAAAGAAGGTGGCaagaggaagaagcagaagcagagagaggagtccaagaagaagaagTCGACCAAAGGCAATCACTAGACCGGACTCGAGGCGCGCGGTGCACCCCCGGACGCTGGCGCTCCCCCGTGCTCGGCGCGCGGTCGTGCACACGCGCTAGGTAGCGGCGTTGGGGCAGGACTGTCTCGAGGCCACACTCGCTCGGCAGGATTATGCGATCACGGATCAGTCAGAGCAGGGTCAGGAGACGGGGCTGACGGCACGGGTGGCGGGGATAGACTTTTGGGATGCGGCCGCGACTCTCTGCTTCTCTCCAGCGCTCAATCTGCTAGCATTTTCCTCTAGTGCTTCCGGATCCTCTTCATTCTTTTCGGCTACTCAACCGCTCCGCGTGCTGCTGGAGTATTTCTAGCTTTAGGAGTGCAGTAGGGCGCAGACAGCTAACTGAGTAACATTCATGAAATGAGGCTCTTTCCTGTGGCGGCGTAGTGTTTGGAATTAAAGTAATTCAGTGGAGTGTAACTTAGAGAATATCGCAAGTGACACACTGACTCCTGCACCTTTTCCTCAGAGCAATCCCGCCACACCAATAGAAGGCTGTCGTGAATCCCATCAGATGTAAAATCATTCCTTCTGTTTGCTCTTTTAATTTGCATCCTCTGCAGGTAGTCCAAATTCAACTTCAAATATGGTGTAGGTTTTGCTAGAGTCCATATTTTTTTTTCTCGGATTTTTGCTAATTA

Publications

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