Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name CCDC112P1
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr3). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr12:8482321-8482733  UCSC
Strand +
Parental Sequence XM_019940847.2
Parental seq. overlap 341 bp
Parental seq. overlap (%) 15.8%
Genomic Region Intergenic
Retrocopy Summary CCDC112P1, located on chr12:8482321-8482733, is a retrocopy of the parental gene CCDC112. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name CCDC112
Full Name N/A
Also known as -
Coordinate chr3:94003028-94033822
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Crab-eating macaque Macaca fascicularis CCDC112P1
Baboon Papio anubis CCDC112P1
Golden snub-nosed monkey Rhinopithecus roxellana CCDC112P1
Horse Equus caballus CCDC112P1
Greater mouse-eared bat Myotis myotis CCDC112P1
Kuhl's pipistrelle Pipistrellus kuhlii CCDC112P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>CCDC112P1
gaggaagaacttGTGAGgcttgaaaaagaaataagtgaaaagttAGACaaggcagaaaaaggaaaactgttgCCAATGCAATTTTCAGGTTTCAAGAAAGAGATTTACATAAACTTGAACTGAAAATTCTAGATAGACAGGCAAAGGAAAAGGTAAAGGTAgaacaaaaaagactggaaaaattacaagaaaagcaagaaaagagtgaaaaaatgtTAGTAGATCCCTCTAGGCTTTACAAAACTTTTACCAAAGGTTGGAAAGAATGGCCCAAAGATATAGGATCATCAAGTTCTGGGCCACTGCTTCATATTCCACATGGGGCTATTCCAATCTGCAGACAAAGAGACTAGAGAAGAATATGAGATAATGAACTTGGCATACAGTTGATGAGAATGTTAATATTCAGTTAT
>XM_019940847.2
CCCTGACGACGGTCgtggtggcggcggcggccaCAGCTGTAGCGGGGGCTGTGGCCGGGGCGGGCGCGGCCACCGGGACCCGCGTGGGAGCAACGCCTGTGCCGCAACAGAGTTATTAacatagaaaaagataaacacaatcATTTCTACAACCAAAAAAGTGACTTCAGAATTGAACATAGTATGCTGGaagaattggaaaataaattgattaacAGCCGGAAAACAGACAGAGTAAAAATCCAGCAACAATTGGCCAAAAtacacaacaatgtaaagaaaCTTCAGCATCAGTTAAAAGATGTGAAGCCTACACCTGATTttgttgaaaagctcagagaaatgatggaagaaattgaaaatgcaaTTAACACTTTTAAGGAAGAGCAGAGGTTGATctatgAAGAGCTTACTAAAGAAGAGAAGACAACTAATAATGAGTTGTGTGCCATATCAAGAAAAATTGACACATGGGCTTTGGATAATTCAgaaacagagaaagctttcagagCAATGTCGAGCAAAGTTCCTGTAGACAAAGTAACACCAAGTACTCTTCCAGAAGAAGTGGTAGAGTTTGAAAAATTCCTTCAGCAAGCAGGAGGGCGACAAGGGGGCTGGGATGATTATGATCACCAGAACTTTGTAAAGGTGAGAAACAAGCATAAAGGGAAGCCAGCATTTATGGGAGAAGTTCTTGAACACCTTCCTGGAAGAACACAGGATGAAGTTCAACAGCATGAGAAATGGTATCAAAAATTTCTGGccctagaagaaaggaaaaaagagTCTATTCAGAATTGGAAAACCAAAAAGCAgcaaaaaaaggaggaaattttcAAGTTAAAGGAAAAAGCGGAGAACATACCAATGCTTTTTCATAATAAACAGGAAGAtaatcaaaagcaaaaagaagaacaaagaaagaagcagaaattgGCAGTTGAAGcttggaaaaaacagaaaagtatagaAATGTCAATGAAATATGCTTCCCAGTTAAAAGAAgagcaagagaaggagaaaaagcagcAGAAAGAACGTCAACGCCAATGTAAACTAAAATTGCTGCTAGAAACTTATACCcagcagaagaaagaacaggaagaaTTTTTGAGACTTGAAAAGGAGATtagggaaaagacagaaaaggcagaaaaaagaaaaaccgcTGCTGATGAAATTTCCAGGTTTCAAGAAAGAGATTTACATAAACTTGAATTGAAAATTCTAGATAGACAATCAAaggaagatgaaaaggcagaaaaacaaagaaaactggcaaaattaaaagaaaagGTTGAAAACAACATTAGTAGAGATCCCTCTAGAGTTTACAAACCTACCAAAGGTTGGGAAGAACGCACCAAAAAGATAGGACCAACAGGCTCTGGGCCACTTCTACATATCCCACATAGGGCTATTCCAACCTGGAGACAAggagtttaaaaaagaatatgggaTAATGAAATTGGCATTCAGTTGATGAGAATGTTAGCATATTCCGTTATAGGAGAGAGTGACTGTGTTCTTGAAATATTACTAGCCTAGTCAGATTGATTATTGTGTTGCATGTGAATTGGCAGGTATTAAGTTCCATGAGGCATTGTCATTAGTGTTTCCTGTTTATACTAAGAGGGTAATTAATGTACAAGTTGGCCTATTATTGATGTAAAAGTTCCTTGAATAAGTCTATGTTAGAAacagtatttcatttaaatacTTAGAACATTTGAAAGATACTTTGTTTTTGTCACTGCATAGCAAAATAAATTGAGACAATCATACAGTaacatttttaaaccaaaattgTAAGATTTATAACTTGGAGCTAAATTAGCCTGAGTAACAaaaatgtaaagtttttttttttgagttatgaAATAAGTTGGTACTTTTTCTAAGTTTAACAAATTGGTAATTTGTCAGTTACTACATTTTTGTGTaccaaatattttgtatttgtttgaaGCATGCTTTGTTTTATatagagaatatttattttaaaaatatgcctcTCATCTCATATATACcctattatttgtattattgaTATTTAATCTTTTTGGTTTCCTTTAGCTATTCCAAATCTCCTTTCAGCCTTTTTGGACTCCACACATTTATAAAATCTTGTGTCTTTCACATC

Publications

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