Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DPRXP2
Plot displaying the genomic locations of a retrocopy (in chr7) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr7:97292741-97292896  UCSC
Strand +
Parental Sequence XM_028838993.1
Parental seq. overlap 127 bp
Parental seq. overlap (%) 16.2%
Genomic Region Intragenic (PRORP)
Retrocopy Summary DPRXP2, located on chr7:97292741-97292896, is a retrocopy of the parental gene DPRX. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DPRX
Full Name divergent-paired related homeobox
Also known as -
Coordinate chr19:53395881-53400686
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens DPRXP3
Chimpanzee Pan troglodytes DPRXP2
Bonobo Pan paniscus DPRXP2
Gorilla Gorilla gorilla DPRXP3
Orangutan Pongo abelii DPRXP2
Gibbon Nomascus leucogenys DPRXP1
Green monkey Chlorocebus sabaeus DPRXP5
Crab-eating macaque Macaca fascicularis DPRXP2
Baboon Papio anubis DPRXP1
Golden snub-nosed monkey Rhinopithecus roxellana DPRXP1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DPRXP2
AATGTTCACCAAGAAACAACTGGAAGATTTAGAGATGTTATTCATTAAGAACCCATACCCAAACTCCAGTCTTTAGAAAGAATTGCCTCAAAAACTGGCATATCTCCACCAGTACTACAGATTTAGTTCAAGAACCTCAGAGCAAAACTCAAGAAA
>XM_028838993.1
gcttgaactcaggaggtggaggttgcagtgagctgagactgtgcccctgcactccagcctgggcgacagagcCTCAGTCACTTGATCCTCATGGTGTACCTCAGTGGAAAGGAAAGGAAAGTTCAGGCTTTTGAGAATGGAGTTGTTAGCAGTTCCCATTTGTGTCTCTTTCCCTTTCTTTCAAGGCAAGGACCAGACGCGTTCACACAGGAAACGAACCATGTTCACTAAGAAGCAACTGGAAGATCTGAACACCTTGTTCAATGAGAACCCATACCCAAACCCCAGCCTTCAGAAAGAAATGGCCTCGAAAATAGACATACATCCAACAGTACTGCAGGTCTGGTTCAAGAATCACAGAGCAAAACTCAAGAAAGCCAAAAGCAAGCATATCCATCAAAAACAAGAAACTCCACAACCGCCACTACCAGAGGGTGGTGAGGTTACCACCAGAGTCAGCCTGAGAAACGCAGACACACTACCCAGATTGCCCAGTGCTGCTCACCCGATCGGCCTGGTGTACACGGGTCAACGAGTCCCCTCATTCCAGCTCATCCTGTACCCCAGCCTCAAGGTCCCTGCCGATGACTTCGTTGGTCACAGAATAGTCCATTTTGGCTGCTGTCAAGATCCTAACATATATTGCCTCTACCCCATTGTGGAATCCCAAGTTTGCGCTCCAAACTTCCATGCTGGGCCTTCTGCCTGTTCATCTCTCCAAAGTCGAGAGAGATGATAAATACAAAAAAAAAGAGATGATAATTACAACACGTTGTAATGGTG

Publications

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