Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name DYNLL1P2
Plot displaying the genomic locations of a retrocopy (in chr1) and its respective parental gene (in chr11). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr1:206218942-206219274  UCSC
Strand -
Parental Sequence NM_001267600.1
Parental seq. overlap 305 bp
Parental seq. overlap (%) 43.4%
Genomic Region Intergenic
Retrocopy Summary DYNLL1P2, located on chr1:206218942-206219274, is a retrocopy of the parental gene DYNLL1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name DYNLL1
Full Name dynein light chain LC8-type 1
Also known as -
Coordinate chr11:120293363-120295833
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Gorilla Gorilla gorilla DYNLL1P1
Orangutan Pongo abelii DYNLL1P2
Gibbon Nomascus leucogenys DYNLL1P4
Green monkey Chlorocebus sabaeus DYNLL1P2
Crab-eating macaque Macaca fascicularis DYNLL1P2
Baboon Papio anubis DYNLL1P1
Golden snub-nosed monkey Rhinopithecus roxellana DYNLL1P7
Marmoset Callithrix jacchus DYNLL1P7
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>DYNLL1P2
AGCATCTCCCCCAGCAGACTGTTGCAGTTGGCCCGCCCACTTCTCCCGGTAACCATGTGCCGCCAAAAGGCCATGGTCAAAAATGCGGACATGTTGGAAGAGATGCAACAGGACTCGGTGGAGTGAGCTACTCAGGAGCTGGAGGAATATAACATAGAGAAGGACATTGCGGCTCACATTAAGAAGGAATTTGACAAAAAGTACAATCCCACCTGGCATTGCATCGTGGGGAGGAACTTCGGTAGTTACCTGACATACGAAATCAAAAACTTCATCTACTTCTACCTGGGCCAAGTGGCCATTCTTCTGTTCAAATCTGGTTAAAAGCATg
>NM_001267600.1
CGGGGCCTGAGCACTAGGCGGCGGCGGCTGCCGTGGGGCTGCTTAGATGCGCCACGGCTTCGGTAGCGACGGCAGCTCTGCGAGGGCCTGACCTGTGCAAGCACCTCCCCCAGGAGACCGTTGCAGTCGGCCAGCCCCCTTCTCCACGGTAACCATGTGCGACCGAAAGGCCGTGATCAAAAATGCGGACATGTCGGAAGAGATGCAACAGGACTCGGTGGAGTGCGCTACTCAGGCGCTGGAGAAATACAACATAGAGAAGGACATTGCGGCTCATATCAAGAAGGAATTTGACAAGAAGTACAATCCCACCTGGCATTGCATCGTGGGAAGGAACTTCGGCAGTTACGTGACACATGAAACCAAACACTTCATCTACTTCTACCTGGGCCAAGTGGCCATTCTTCTGTTCAAATCTGGTTAAAAGCATGGACTGTGCCACACACCCAGTGATCCATCCAAAAACAAGGACTGCAGCCTAAATTCCAAATACCAGAGACTGAAATTTTCAGCCTTGCTAAGGGAACACCTCGATGTTTGAACCTTTGTTGTGTTTTGTACAGGGCATTCTCTGTACTAGTTTGTTGTGGTTATAAAACAATTAGCAGAATAGCCTACATTTGTATTTATTTTCTATTCCATACTTCTGCCCATGTTGTTTTCTCTCAGTCCATTCCTTTAAAAAATAAATCTGTTGCAGATG

Publications

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