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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name FTLP72
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr19). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chrX:95645710-95645887  UCSC
Strand +
Parental Sequence NM_001280630.1
Parental seq. overlap 150 bp
Parental seq. overlap (%) 22.8%
Genomic Region Intergenic
Retrocopy Summary FTLP72, located on chrX:95645710-95645887, is a retrocopy of the parental gene FTL. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name FTL
Full Name N/A
Also known as FT
Coordinate chr19:51160268-51161599
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens FTLP16
Chimpanzee Pan troglodytes FTLP10
Bonobo Pan paniscus FTLP12
Gorilla Gorilla gorilla FTLP12
Gibbon Nomascus leucogenys FTLP14
Green monkey Chlorocebus sabaeus FTLP16
Golden snub-nosed monkey Rhinopithecus roxellana FTLP5
Mouse lemur Microcebus murinus FTLP12
Pig Sus scrofa FTLP33
Horse Equus caballus FTLP16
Dog Canis familiaris FTLP43
Panda Ailuropoda melanoleuca FTLP50
Cat Felis catus FTLP53
Orangutan Pongo abelii Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>FTLP72
CTGGAGAAGAGCCTGAACCAGGCCTTCTTGGATCTCCATGCCCTGGGTTCTGCGAGCGCGGACGCCCAGCTCTGCGAGTTCCTGGAGAGCCACTTCCTGGAGGTGGAGAGGAAGATCCTCAAGAAGATGGGCGACCACCTGACCAACCTGCGCAAGCTGGCCGGGCCGCAGGCCGGGC
>NM_001280630.1
TATTACCGATCAACCATGAGCTCCCAGATTCGTCAGAATTATTCCACCGAGGTGGAGGCCGCCGTCAACCGCCTGGTCAACATGCATCTGCGGGCCTCCTACACCTACCTCTCTCTGGGCTTCTATTTCGACCGCGACGATGTGGCTCTGGAGGGCGTGCGCCACTTTTTCCGCGAATTGGCCGAAGAGAAGCACGAGGGCGCCAAGCGtctcttgaaaatgcaaaaccaGCGCGGCGGCCGCGCCCTCTTCCAGGACGTGCAGAAGCCATCTCAAGATGAGTGGGGTAAAACTCAGGACGCTATGGAAGCCGCCATTAAAATGGAGAAGAACCTGAACGAGGCCCTTCTGGATCTGCATGCCCTGGCTTGTGCCCGCGCAGACCCCCACCTCTGCGACTTCCTGGAGAGCCACTTCCTAGATGAGGAGGTGAAACTCATCAAGAAGATGGGTGACCACCTGACCAACCTCCGCAGGCTGGCTggtccccaggctgggctgggcgagTATCTCTTCGAAAGGCTCACCCTCAAGCACGATTAGGAGCCTCCGGAGCCCAGTGGCCTTTGAGGAGCCCCTCTGGTGTCAGGGCTTCTGCCTGAAGCCCCTCTCTGCAGCCAGTAGGCAGCTTGTTAACCACACTGGAGCCCTCTCCC

Publications

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