Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Advanced Search

Summary

Retrocopy Name NSMCE4AP1
Plot displaying the genomic locations of a retrocopy (in chr11) and its respective parental gene (in chr16). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr11:17651859-17652089  UCSC
Strand -
Parental Sequence XM_004325209.3
Parental seq. overlap 196 bp
Parental seq. overlap (%) 14.2%
Genomic Region Intergenic
Retrocopy Summary NSMCE4AP1, located on chr11:17651859-17652089, is a retrocopy of the parental gene NSMCE4A. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name NSMCE4A
Full Name N/A
Also known as -
Coordinate chr16:9486517-9500805
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Baboon Papio anubis NSMCE4AP1
Mouse lemur Microcebus murinus NSMCE4AP1
Cow Bos taurus NSMCE4AP1
Horse Equus caballus NSMCE4AP1
Dog Canis familiaris NSMCE4AP1
Panda Ailuropoda melanoleuca NSMCE4AP1
Cat Felis catus NSMCE4AP1
Pale spear-nosed bat Phyllostomus discolor NSMCE4AP1
Velvety free-tailed bat Molossus molossus NSMCE4AP1
Greater mouse-eared bat Myotis myotis NSMCE4AP1
Kuhl's pipistrelle Pipistrellus kuhlii NSMCE4AP1
Greater horseshoe bat Rhinolophus ferrumequinum NSMCE4AP1
Egyptian rousette Rousettus aegyptiacus NSMCE4AP1
Sloth Choloepus didactylus NSMCE4AP1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>NSMCE4AP1
ATCAAGAAGCGacagaaaaagaagtagaaagaatcTTGGGATTGTTGCAAACGTACTTTCAGAAGTATCCTGATACTCCCGTGTCCTATTTTGAGTTTGTGATTGACCCAAACTCTTTCTCTCGTACTGTGgagaatatattttatgtttctttcattATAAGGGATGGTTTTGCAAGAATAAGGCTTGACCATGACAGGCTGCCAATATTGGAGCCCATTAATATTAACC
>XM_004325209.3
CTGGCGCGAACTTCCGCCGTTGCGAAGTTGCAGGGCGGCTTGGCGCGATGTCTGGGGACGGCAGCGGCCGCCGGTCCgagggccggggccggggccgcgaCCCGCACCGGGATCGCACCTGCTCCCGCTCCCGATCGCGCTCCCCGCTGTCGCCCGTGTCCCGCCGCGGCGCCGCGCCCGAGCGCAGGGAGGCCCCGGAGCGCCCGAGCTTGGAGGAGACGGAGCCGTCGGATTCCGGGGACGAGATGATGGACCCGGCGAGCTTGGAGGCGGAGACCGACCATGGCCTGTGCCGCCAGATCCGCCATCAGTACCGGGCGCTCATCAACTCGGTCCAACaaaaccgGGAGGATATATTGAATGCCAGCGACAAGTTAACAGAGGTCCTTGAAGAGGCCAACACCCTGTTTAATGGAGTGTCCCGAGCAAGAGAAGCAGTCCTAGACGCCCACTTTCTTGTTTTGGCTTCAGATTTGGGCAAAGAGAAGGCAAAGCAGCTGCGTTCTGATCTGAACTCGTTTGATATGTTAAGATATGTCGAAACCCTACTGACACATATGGGTGTAAATCCGCTAGAAGCTGAAGAACTCATCCGTGATGAAGATAGTTCTGATTTTGAATTCATAGTCTATGACTCCTGGAAAATATCAGGCAGAACAGCAGAAAACACCTTTAATAAAACCCATACATTCCACTTTctGTTGGGTTCAATACAAGGAGAGTGCCCTGTTCCAAAGCCACGAACCGAGCGTTCCAGAAAAGTTCGGATGATAGAAGAGCAGCAGGCAATGCCTGACGAGttaaaaagaatggaagaatcTCATCAAGAAGCaacagaaaaagaagtagaaagaatcTTGGGATTGTtgcaaacatattttcaaaaagatCCTGATACTCCGATGTCCTTCTTTGACTTTGTGGTTGATCCACATTCTTTTGCCCGAACAGTGGAAAACatctttcatgtttcttttattataaggGATGGGTTTGCAAGAATAAGACTTGACCAAGACCGACTGCCAATAATAGAGCCTGTTAATATTAACGAAGAAAGTGGAGGAATTGACCAAAACACTCAAATTAGGAATCAGGGAATTATAGCTTTGAGTTACCGTGACTGGGAGGAGATTGTGAAGACCTTTGAGATCTCAGAGCCTATGATTACTTCAAGTCAAAGCCGGCAGAGGCTAAGCGCTTGACACCAGCTGAAGGACTCAAGTGGATAGCGAAGTCCAAAAAGGAAAGCAGCGTATTGTAttgtacatactgtatgattaaacatttttaaagacagattGTTTTTAGTAAAGTGTAGCTTTTGATAGTTAATGGGTCGTCTTTGATTAAAGGAGGTTCACTGCCATATTCACAAATAA

Publications

PMID - Link Title