Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name PDHA1P1
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr10:71476851-71477367  UCSC
Strand -
Parental Sequence XM_033849043.1
Parental seq. overlap 416 bp
Parental seq. overlap (%) 18%
Genomic Region Intragenic (SLMAP)
Retrocopy Summary PDHA1P1, located on chr10:71476851-71477367, is a retrocopy of the parental gene PDHA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PDHA1
Full Name N/A
Also known as -
Coordinate chrX:113022108-113047962
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PDHA1P1
Bonobo Pan paniscus PDHA1P1
Gibbon Nomascus leucogenys PDHA1P1
Baboon Papio anubis PDHA1P1
Golden snub-nosed monkey Rhinopithecus roxellana PDHA1P1
Mouse lemur Microcebus murinus PDHA1P2
Horse Equus caballus PDHA1P2
Dog Canis familiaris PDHA1P1
Egyptian rousette Rousettus aegyptiacus PDHA1P1
Sloth Choloepus didactylus LOC119524040P1
Chimpanzee Pan troglodytes Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Green monkey Chlorocebus sabaeus Without Homology
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PDHA1P1
ATATTTGAAGCATACAACATGGCAACTTTGTGGAAATGACCGTTTATTTTCATCTGTGAGAAAAACCACTGTGTAACGGGAACATCTGTTTAGAGAGCAGCAGCCATCACTGATTACTACAAGAAAGACAATTTTCTTCCTGGGCTTAGGTCAGATGAATGGATGCTCTATGTGTCCAGGAGGCAACAAAGATTGCAGCTGCCTATTATAGATCTGTATAGGGGATCATACTGATAGAGCTGCAGACTCAATATTATGAAGGACACAGTATGCATGATCTTGGAGCCGGTTACTAtacacaagaagaaatacaagaaGTAAGAAGAGTGACCGTATTATGCTTCTCCGAGATAGAATAGCACACAGCAATACTGCCAGTGttgaagaatgaaaggaaactgATGTTgaagtgaagaaagaaattgagagCACAGTCTAGTTTGCTACAGTTGATCCCAAACCACCTTTAGAAGAGCTAGGCCATCACTTCTATTACAGTGATCCATCTTTTGAAGTT
>XM_033849043.1
CCCGGCGAGGCGCGTGACGTTTCCGTCGCGCCGTGCTGGCGTGAAGTGGTAGCGTCCGCTCCGAGAACCTGAAGGAGACTTGGAGGCACCTGGGCCGCGCTGCTTGGGCCGTTGGGAGTCGCCGCTGCCGCCACTGCCCGCACTCCATGAGGAAGATGCTCGCCGCCGTCTCCCGCGTGTTGTTGGGCGTCGCCCAGAAGCCGGCAAGCAGAGTGCTGGTGGCATCCCGTaattttgcaaatgatgctacatTTGAAATTAAGAAATGTGATCTTCACCGGCTGGAAGAGGGCCCTCCTGTCACTACGGTGCTCACCAGGGAGGATGGGCTCAAATACTACAGGATGATGCAGACTGTTCGTCGAATGGAGTTAAAAGCAGATCAGctatataaacagaaaattattcGTGGTTTCTGTCACTTGTGTGATGGTCAGGAAGCTTGTTGTGTGGGCCTGGAGGCCGGCATAAACCCCACAGACCATCTGATCACAGCATATCGGGCTCACGGCTTTACGTTTACTCGTGGGCTTTCTGTCCGAGCAATTCTCGCAGAGCTTACAGGACGAAGAGGAGGTTGTGCTAAAGGAAAAGGAGGATCGATGCATATGTACGCCAAGAACTTCTACGGGGGCAATGGCATCGTGGGAGCTCAGGTGCCCCTGGGAGCTGGGATTGCTCTGGCCTGTAAGTATAACGGAAAAGATGAAATCTGTTTGACTTTGTATGGTGATGGCGCTGCTAATCAGGGTCAGATATTCGAAGCTTACAATATGGCGGCTTTGTGGAAATTGCCTTGTATTTTCATCTGTGAGAATAACCGCTATGGGATGGGAACATCTGTGGAGAGAGCAGCAGCCAGCACTGATTACTACAAGAGAGGCGACTTCATTCCTGGGCTGAGGGTAGATGGAATGGATATCCTGTGTGTCCGGGAGGCCACAAGGTTTGCAGCTGCCTATTGTAGAGCTGGAAAGGGGCCCATACTGATGGAGCTGCAGACTTACCGTTACCATGGGCACAGCATGAGTGATCCTGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGTTAGAAGTAAGAGTGACCCTATCATGCTTCTCAAGGATAGGATGGTGAACAGCAATCTGGCCAGTGTTGAAGAACTAAAGGAAATTGATGTTGACgtgagaaaagaaattgaggatgCTGCCCAGTTTGCTACAGCTGACCCTGAACCACCTTTGGAAGAACTCGGCTATCACATCTACTGCAGCGATCCGCCTTTTGAAGTCCGGGGTGCAAACCAGTGGATCAAGTTTAAGTCCATCAGTTAATGCAAGATGGTACACCTTCAGTTGGGTATTCAGCAGCAACTGTAAGGAATGCTTTGGGTTCTCTACTTTGTTAAGGAGGAAAAAACCCATAGAAAGAAAGTGTagatttagatagatagatagatagatagatagtgtAATTGCATGTGGTTTGTACAGTGTTGCATTAAAAGATACAACGTCTTTTAATGTTATATCTTAAGGATAGTATGGATCTTATTATAAAGGTTATTTTAGTTATATAGGTCTAAAATAGGTAATAAGAGTTTGCTTAACCCTCCTTCAAATTACTTCCTTAAAATAGTTCTATTTGGTTTAGTTGTATACTCgtttaacaaatacttttttagTTACTAAAAGGAGAAACAATTCCTTATATGCCTGTCCAACTCTGCCACCTTTTTGTGGGGCGATCATTGTCCTGTCCCTCCCAGTGCCCAGCAGCTTACCTGGTGTACCCTAACGTGCACACACGCCCCCATTTGTGTGCATGTCGGTGCTGAAGCCTGTTCACACTGAACCATCATTTCTCCTTAATAAAACACAGTATTTATTATAACCAGGCAGGGGTGGAAGGACAATTCGATTTTTAAATAAGACTACTTCATTTTAAAGGCCAAATAAGTTAgttttctccatttcattaagtATAAATATGAAgctattttcttaatagttttctaTTTACAGTCatatcaaacattaaatacaagGCATATTCTTATCAATTTTAAGTGCAATTCCAGTTAATAGTAATGTATGGAATGTGTGATCTGAAACAGTGATTCCCAgcctttttgttattttaaacacCTGTTGTTTCACCTTTCCAGCAGATATTTTTCCAttgaagtaaattaaaattcatttttaaggatTCCCTAATACTCTGGGATGTCAAGACCAGGTTTTACAATCACTGTTTTCACAATACATACAAGTTCTACTCACCTTGAAAACATGTTgataaataaaaggtaaaaattttttCCATCA

Publications

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