Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RNF10P3
Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr13). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr10:91732110-91732472  UCSC
Strand -
Parental Sequence XM_019950308.2
Parental seq. overlap 293 bp
Parental seq. overlap (%) 10%
Genomic Region Intergenic
Retrocopy Summary RNF10P3, located on chr10:91732110-91732472, is a retrocopy of the parental gene RNF10. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RNF10
Full Name N/A
Also known as -
Coordinate chr13:16554658-16586137
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RNF10P1
Chimpanzee Pan troglodytes RNF10P1
Bonobo Pan paniscus RNF10P1
Gorilla Gorilla gorilla RNF10P1
Orangutan Pongo abelii RNF10P1
Gibbon Nomascus leucogenys RNF10P2
Green monkey Chlorocebus sabaeus RNF10P2
Crab-eating macaque Macaca fascicularis RNF10P1
Rhesus Macaca mulatta RNF10P1
Baboon Papio anubis RNF10P1
Golden snub-nosed monkey Rhinopithecus roxellana RNF10P1
Sheep Ovis aries RNF10P1
Horse Equus caballus RNF10P1
Panda Ailuropoda melanoleuca RNF10P1
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Dog Canis familiaris Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RNF10P3
GGAGTCTGAAACAAGACTCaccctttccttcctttgccCAGAAGCTAAGGGTTGGAAAACCAATGCAGATGTTTGGCTCAAAACCACTCCAAAGAAAGATGAGAACAGCCTGCTTCCTGCCGCCCCTCTGGACAGCAATCAGGAGAGTGATAACTCAGACCCTGCCCTGTGCCCACTTCCAAGATCCCTCCGGCCAAGCCGCCGAAGCGGCTTCACGACACTGGACCCACCAACAACTTCAAAAGCCCTCTCTGAAGAGCAAGAAggacagacaaggaaaagcagaaagagaagctCCCGTGCAGCACCCCGGGCATCTGCACCGAGGGACACCACTGGCTCAGGCTACCTTCTCCCTCTGGG
>XM_019950308.2
GGCCTCGGCCCAGAGGCGAGTGTCGGTCTCTGTGTCGGAGACACTTGTCCCCGACACCAAGACAGCAAGCCCTCTCCCTTGCCCCGCGGCGGGAGAGCGTGTCCGGCCGGCCGGCGGGGCTCGCGCACCCTCCCTCGCCTCCCCTTTCCCTGCAGCCTCCGCCCCGCCAGGCCCGGCCCGGACCTCCGAGCCCcggcctcctcctccttctcggtcaccgccgccgccgccgggctcAAGAGCCCCGCCCGCCGCTTCTCCTTCCAGTTTGAGAAGCCGAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAACCGCTGCCGCCGCCGACCCCCGCCGGCCCCGAACGCCATGAGCCTGGGTCTCCGCCGCGCCCGCTCCGCTCCgactgccgccgccgccgccaagGCCCCCTTTGATGCCGCAGAGCTCCCCCagcgccgccgccaccgcctccGACATGGACAAGAACAGCGGCTCCAGCAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCCACCCGCTCCGCCTCTGCAGGGCCGGCCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCAAGTGGATCCAAGCGTTATAATCGCAAACGTGAACCTTCCTACcccaaaaatgaaaattttatcaaCCAGTCCCGTCGCTCCAATtcacagaaaagcaaaacttttaaTAAGATGCCTCCTCAAAGgggcggcggcagcagcaacaAACTCTTTAGCTCTTCTTTCAATGGTGGAAGACGAGATGAGGTAGCAGAGGCTCAGCGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGTCCGAAGAAGATCAACCTGAATCACTTGTTGAATTTCACTTTTGAACCCCGTGGCCAGGCAGGTCATTTTGAAGGCAGTGGACATGGCAGCTGGGGAAAAAGGAACAAGTGGGGACATAAGCCTTTTAACAAGGAATTGTTTTTACAAGCCAACTGCCAGTTTGTGGTGTCTGAAGACCAAGACTACACAGTTCATTTTGCTGATCCTGATACCTTAGTCAACTGGGACTTTGTGGAGCAAGTGCGCATTTGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTATATCCACCTACTGCAGCCAAGATAACCCGTTGTGGACACATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCATTGAGCGAGAAGACCTGGAGTAAATGTCCCATCTGTTACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAATCACATCAGTATGTTGTTGGTGATACCATTACAATGCAGCTGATGAAGAGGCAGAAAGGGGTGTTGGTGGCCTTGCCCAAATCCAAATGGATGAATGTAGAACATCCTATTCATCTTGGAGATGAACAGCACAGCCAGTACTCCAAATTGCTGCTGGCCTCGAAGGAGCAGGTGCTGCACCGGGTGGTTCAGGAAGAGAAAGCAGCACTAGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCCGAGTCCTGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGCTCTGTCAGGATTGGCTGAAAGCAGCGGGGAGGTCGCTGGTGTCGTGGCTGCTCTGGAACAACTGGTGCTGATGGCTCCCTTGGCGAAGGAGTCCGTTTTTCAACCCAGGAAGGGCATGCTGGAGTATCTGTCTGCTTTTGATGAAGAGACCACAGAAGTTTGTTCTCTTGGCTCTCCTCCTCGTCCTCTTGCTCTCCCTCTGgtagaggaagaggaagcagttTCTGAACCAGAGCCTGAGGGGTTGTCAGAGGCCTGTGAGGACTTGGAGTTAGCAGAAGACAATCTTGGAGAGGGGACCATTTGTACCGAGTCCAGCCAGCAGGAACCCGTCACCAAGCCAAGCATCACACACCTGAGCAGCTCTCCTTGTTACTACTTTTACCAAGCGGAGGATGGGCAGCACATGTTCCTGCACCCCGTGAATGTGCGCTGCCTCGTGCGGGAGTATGGCAGCCTGGAACAGAGCCCTGAGAAGATCTCAGCCACGGTGGTGGAGATCGCTGGGTATTCCATGTCTGAGGATGTGCGACAGCGTCATAGATACCTCTCTCACTTGCCGCTCACCTGCGAGTTCAGCATCTGTGAACTGGCTCTGCAGCCTCCTCTGGTCTCTAAGGAAACCCTAGAGATATTCTCAGATGATATTGAGAAGAGGAAGCGGCAGCGCCAGAAGAAGGCCCGGGAGGAACGTCGCCGAGAGCGCCGGATTGAGATGGAGGAGAACAAGAAGCAGGGCAAGTACTTCCTGCTGACCCCTCTGTCACCCACGGCCAGTCAGGGCAGTTCTTCATTCTGCGTTGGGAGTCTGGAAGAAgactctcccttcccttcctttgccCAGATGCTGAGAATTGGAAAAGCAAAAGCAGATGTGTGGCCCAAAACTGCTCCAAAGAAAGGTGAAAACAGCTTAGGTCCTCCTGCCCCTGTGGACAGCGATGGGGAGAGTGATAACTCAGACCGTGTTCCTGTGCCCAGTTTCCAGAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTCATGAAACTGGACACGCCAGCTACTTCAGATCCCCTCTCTGaagagaaaggaggaaagaaaagaaaaaaacagaaacagaagctCCTGTTCAGCACCTCAGTCGTCCACACCAAGTGACACTACTGGCCTGGCTACCTTCTccatctggttttcttttttctgcgcttttgttttgctgctgtaatttttaagtatttgagtTTGAACAGATTagctctggggggagggggtttcCACAATGTGAGGGGGaaccaagaaaattttaaatacagtgtaTTTTCCAGCTTCCTGTCTTCACACCAAAATAAAGTATTGACACTCACAAGAGA

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