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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name RPS18P3
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr10). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr12:14621302-14621455  UCSC
Strand -
Parental Sequence XM_004319421.2
Parental seq. overlap 129 bp
Parental seq. overlap (%) 21.8%
Genomic Region Intergenic
Retrocopy Summary RPS18P3, located on chr12:14621302-14621455, is a retrocopy of the parental gene RPS18. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name RPS18
Full Name N/A
Also known as -
Coordinate chr10:39964678-39969610
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens RPS18P20
Chimpanzee Pan troglodytes RPS18P10
Bonobo Pan paniscus RPS18P11
Gorilla Gorilla gorilla RPS18P10
Orangutan Pongo abelii RPS18P10
Gibbon Nomascus leucogenys RPS18P13
Green monkey Chlorocebus sabaeus RPS18P8
Crab-eating macaque Macaca fascicularis RPS18P7
Rhesus Macaca mulatta RPS18P7
Baboon Papio anubis RPS18P9
Golden snub-nosed monkey Rhinopithecus roxellana RPS18P5
Mouse lemur Microcebus murinus RPS18P2
Greater horseshoe bat Rhinolophus ferrumequinum RPS18P1
Marmoset Callithrix jacchus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>RPS18P3
GAGAGGTCCCTGAGGATGAAGTGGAACTTGTGATCACCATCACGCAAAATCCAAGCCAACACAAGAACACAGACTGGTTCTGGAACAGACAGAAGGACGTGAAGGGTGGGAATCACATCCAGGTTCTGGCCAGTGATCTGGACGACAAGCTCCA
>XM_004319421.2
CGCCCCTTCCGACGGGTAGTGATATAGTGCTGGTACGTCACTTCCGCTCTCTCTTCCACTGGAGGCCTGCACGCCGCCGCTGGGGCCGCCGCCATGTCTCTAGTAATCCCCGAGAAGTTCCAGCACATTTTGCGAGTACTCAACACCAACATCGATGGGCGGCGGAAAATTGCCTTTGCCATCACTGCAATTAAGGGTGTGGGGCGAAGATATGCTCATGTGGTGTTGAGGAAAGCAGACATCGACCTCACCAAGAGGGCAGGAGAGCTCACTGAGGATGAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCAATACAAGATCCCAGATTGGTTCTTAAACAGACAGAAGGACGTGAAGGATGGAAAATACAGCCAGGTCCTGGCCAACGGTCTGGACAACAAGCTCCGTGAAGACCTGGAGCGACTGAAGAAGATTAGGGCCCACCGAGGGCTCCGCCACTTCTGGGGACTTCGTGTACGAGGCCAGCACACCAAGACCACAGGCCGCCGTGGCCGCACCGTGGGTGTgtccaagaagaaataaatttgtggGCGTTGTCTGTTAATAAATAGTTTATACAGTTA

Publications

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