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Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name WBP2P1
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Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr20). Each line represents a retrocopy.
Species Tursiops truncatus
Coordinates chr8:70931827-70932045  UCSC
Strand -
Parental Sequence XM_033846684.1
Parental seq. overlap 181 bp
Parental seq. overlap (%) 22.8%
Genomic Region Intragenic (LOC109552239)
Retrocopy Summary WBP2P1, located on chr8:70931827-70932045, is a retrocopy of the parental gene WBP2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name WBP2
Full Name N/A
Also known as -
Coordinate chr20:51030252-51037884
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens WBP2P2
Chimpanzee Pan troglodytes WBP2P1
Bonobo Pan paniscus WBP2P1
Gorilla Gorilla gorilla WBP2P1
Orangutan Pongo abelii WBP2P1
Gibbon Nomascus leucogenys WBP2P2
Green monkey Chlorocebus sabaeus WBP2P1
Cow Bos taurus WBP2P1
Panda Ailuropoda melanoleuca WBP2P1
Cat Felis catus WBP2P2
Crab-eating macaque Macaca fascicularis Without Homology
Rhesus Macaca mulatta Without Homology
Baboon Papio anubis Without Homology
Golden snub-nosed monkey Rhinopithecus roxellana Without Homology
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Sheep Ovis aries Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>WBP2P1
TTCTATCCAGGACCTTCCATGATGGACAGGGCCATGGAACGGGTGCAGCCATGGCCACCACCCTATCCTAGGGCCACGGAGCCTCCCATCAGCAGCCCTGATGTTCCCTCCACTCCTGCAGCTGAAGCCAAGGCTGTAGAGGCAGCTGCTAGAGCCTGTTACAACCTGGGTAACCCACACAATGCCTACATGCCCACAAAccagcctccacctcctccc
>XM_033846684.1
CCGAGTCTCGGGACCCTTTTCCGAGAGACTATGGCGCTCAACAAGAATCACTCGGAGGGCGGCGGAGTGATCGTCAACAATACCGAGAGCATCCTGATGTCCTATGACCATGTAGAACTTACGTTCAGTGACATGAGGAATGTGCCAGAGGCCTTCAAAGGGACCAAGAAAGGCACCGTCTACCTTACCCCGTACCGGGTCATCTTTCTGTCCAAGGGGAAGGATGCCATGCAGTCCTTCATGATGCCGTTTTATCTGATGAAGGACTGTGAGATCAAGCAGCCTGTGTTTGGAGCAAACTACATCAAGGGAACAGTGAAGGCTGAAGCGGGAGGTGGCTGGGAAGGCTCTGCGTCGTACAAGTTGACCTTTGTGGCAGGGGGCGCCATTGAATTTGGGCAGCGGATGCTACAGGTGGCATCTCAAGAGTTCTATCCGGGACCTCCCATGATGGACGGGGCCATGGGGTACATGCAGCCCCCGCCGCCGCCCTACCCTGGGCCCATGGAGCCTCCGGTCAGCGGCCCCGATGTCCCCTCCACTCCTGCAGCTGAAGCCAAGGCCGCCGAAGCAGCCGCCAGCGCCTATTACAACCCAGGCAACCCACACAATGTCTACATGCCCACGagCCAGCCTCCGCCGCCTCCTTACTACCCCCCAGAAGATAAGAAGACCCAGTAGACCGCTCACACCCACCTCCTCCCGCCTCTCTttgctctctcctcccctccccttggggCTGAGTCTGGGATGGGGGGCGGGCCTCGTCCTTCTCCAGGTCTGATTATAAA

Publications

PMID - Link Title
No publications available for this retrocopy