Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name GEMIN2P2
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Plot displaying the genomic locations of a retrocopy (in chr2) and its respective parental gene (in chr7). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr2:97915319-97916793  UCSC
Strand +
Parental Sequence XM_001092707.4
Parental seq. overlap 1064 bp
Parental seq. overlap (%) 76.5%
Genomic Region Intergenic
Retrocopy Summary GEMIN2P2, located on chr2:97915319-97916793, is a retrocopy of the parental gene GEMIN2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name GEMIN2
Full Name gem nuclear organelle associated protein 2
Also known as SIP1
Coordinate chr7:101183472-101207928
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens GEMIN2P2
Chimpanzee Pan troglodytes GEMIN2P2
Bonobo Pan paniscus GEMIN2P2
Gorilla Gorilla gorilla GEMIN2P2
Orangutan Pongo abelii GEMIN2P2
Green monkey Chlorocebus sabaeus GEMIN2P2
Crab-eating macaque Macaca fascicularis GEMIN2P2
Baboon Papio anubis LOC110742473P1
Golden snub-nosed monkey Rhinopithecus roxellana GEMIN2P1
Marmoset Callithrix jacchus GEMIN2P3
Gibbon Nomascus leucogenys Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

HeartKidneyLiverOvaryBrainTestis00.020.040.060.08
log10(TPM+1)

Related Sequence

>GEMIN2P2
ATTTGAAAACCATGGTTCGGGTACCAGCAGAGTCTGCAATGGAAGAGTTGACGCCTCAGCTATTGTCAGCAGAGCTCTGCAACTTGATGGAAGGTTTTGATCCCTTGGTTCCCCTGAGGACACCTCAGGAATGCCTGAGGCGGGTCCAGATCGAAGCAGCGCAATGTCCAGATGTTGTGGTAGCACAAATTGACCCAAAGAAGTTGAAAAGGAAaGTTGAAAAGGAAGCAAAGTGTGAATATTTTTCTTTCAGGATGCCAACCGGCCCCTGAAGGTTATTCCCCCACACTTCAGTGGCAACAGCAACAAGTGGCACTGTTTCCAACTGTTGGACAGAATGTGAACAAACATAGAAGTCACTGGAAATCACAATAGTTGGATAGTAATGTGACAATGCCAAAATCTGAAGATGAAAAAGGCTGGAAGAAATTTTCTCTGGGTGAAAAGTTATGTGCTGATGGGGCTGTTGGACAAGCCACAGTCGAAAGTCCCAGAGTAGATTCTGCACAAGAAAGATGGCTTTATGCTTTATGGACTTGTCTGGAAAAGTCTTTATTATCTCAGGCTCATTCACTGATTTGGCAGCTTGCAAGGTGCTGTGAAGTGAGGCTCTTAGTGGAGAGCAAACATGATGAGAAGGTTCCTGCTTTGAATTTATTAGTCTGCTTGGTTAGCAGGTATCTTGACCAATGTGATTTAGCTGATGAGCTATCTTGATGTAGCTGATCTTTCAGTGATAGAAGATATCTCTCACAAAGGCAGCTTAACTCTGAGGAAATGCAATGCCAATTCAACTACAGATTGCAACACATCTTCAACACTATGTGAGGAGTTCACATCTTACCCTGTGCCGTTCAGGTTGATACTCAGAATATAGGTTGTATTGATTTGAATGTCTGAAATATCAACGAAAAATCACCCCGCAGTTTTTGATGAACAGTTTGAACCGTTTTCTGTAATCAAGCAGCTTGCATAGAAATTGTATGATGAAATTTTACATAGGTTCTTGGTCCTGTTTTGTTGTTTATCTACATATATACATATACAATTTTATTGAAAATATGTTTTGGTTACTAAAATTTTGTTTGACTCCTAACAAAAGACAATGGATGGCCTTAGCATCAGAATTAAAATAATCTAGAGTACATGACAAATGCATTCACAGCAAAAAAATTAATC
>XM_001092707.4
GTCTACTTGTGCGCCTGCGCTGTGACCTAGAATGGGCGCAAGCGCTGAGCGGAACTGGCTGGTTTGAAAACCATGGCGTGGGTACCAGCGGAGTCCGCAGTGGAAGAGTTGATGCCTCGGCTATTGCCGGTAGAGCCCTGCGACTTGACGGAAGGTTTCGATCCCTCGGTACCCCCGAGGACGCCTCAGGAATACCTGAGGCGGGTCCAGATCGAAGCAGCTCAATGTCCAGATGTTGTGGTAGCTCAAATTGACCCAAAGAAGTTGAAAAGGAAGCAAAGTGTGAATATTTCTCTTTCAGGATGCCAACCCGCCCCTGAAGGTTATTCCCCAACACTTCAATGGCAACAGCAACAAGTGGCACAGTTTTCAACTGTTCGACAGAATGTGAACAAACATAGAAGTCACTGGAAATCACAACAGTTGGATAGTAATGTGACCATGCCAAAATCTGAAGATGAAGAAGGCTGGAAGAAATTTTGTCTGGGTGAAAAGTTATGTGCTGACGGGGCTGTTGGACCAGCCACAAATGAAAGTCCTGGAATAGATTATGTACAAATTGGTTTTCCTCCCTTGCTTAGTATTGTTAGCAGAATGAATCAGGCAACAGTAACTAGTGTCTTGGAATATCTGAGTAATTGGTTTGGAGAAAGAGACTTTACTCCGGAATTGGGCAGATGGCTTTATGCTTTATTGGCTTGTCTTGAAAAACCTTTATTACCTGAGGCTCATTCACTGATTCGGCAGCTTGCAAGAAGGTGCTCCGAAGTGAGGCTCTTAGTGGATAGCAAAGATGATGAGAGGGTTCCTGCTTTGAATTTATTAATCTGCTTGGTTAGCAGgtattttGACCAACGTGATTTAGCTGATGAGCCATCTTGATGTAGCTGATCTCTCAGGGATAGAAGATATTTCTCATGAAGGCAGCCTAACTCTGAGGAAAGCAGTGCCAATTCAAGTACAGATTGCAACACATCTTCAACACTATGTGAAGGGTTCACATCTTAACCTGTGCAATTCAGATTGATACTCAGAATATAGGTTGTATTGATTTGAATATCTGAAATATCAATGGAAAATCCCACTCAATTTTTGATAAACAGTTTGAACAGTTTTCTGTAATCAAGCAGCTTGCATAGAAATTGTATGATGAAATTTTACATAGGTTCTTGGTGCTGTTTTGTTCTTTTTTTGGTTTTTGTTGTTTTGTTATTTCTTTATATACATAGAAAATTTTATTGAAAATATGTTTTGGTTACTAAAATTTTATTTGAGTCCTAACAAAAGACAATGGATGGCCTTAGCATCAGAATTAAAATAATCTGGATTAAATGGCAAATGTGTTCATAGTCAGCAATAAAATTAATCAAACAGTA

Publications

PMID - Link Title
No publications available for this retrocopy