Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGA1P5
Plot displaying the genomic locations of a retrocopy (in chr13) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr13:34398901-34400764  UCSC
Strand +
Parental Sequence XM_028846865.1
Parental seq. overlap 1582 bp
Parental seq. overlap (%) 66.9%
Genomic Region Intragenic (C13H2orf81)
Retrocopy Summary HMGA1P5, located on chr13:34398901-34400764, is a retrocopy of the parental gene HMGA1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGA1
Full Name high mobility group AT-hook 1
Also known as -
Coordinate chr4:135249533-135259619
Strand -
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGA1P8
Chimpanzee Pan troglodytes HMGA1P1
Bonobo Pan paniscus HMGA1P1
Gorilla Gorilla gorilla HMGA1P1
Orangutan Pongo abelii HMGA1P1
Gibbon Nomascus leucogenys HMGA1P4
Green monkey Chlorocebus sabaeus HMGA1P5
Crab-eating macaque Macaca fascicularis HMGA1P4
Baboon Papio anubis HMGA1P4
Golden snub-nosed monkey Rhinopithecus roxellana HMGA1P6
Marmoset Callithrix jacchus HMGA1P7
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGA1P5
CTTTTTAGCTCCCCTGAGGCGGGGCTGCGCTGTCCTAAGGGGGACTCCGAGCCTGGGCTATTTCTGGCGCTGGCGCGGCTCCAGGAAGGCATCCACATTTGTGACCAGCGGTGGCAGCGGTGGAGCCTGGCCGGGCCTCAGCGCCCAGCACCGCCGCTCCCACCAAACCGGAGCATGCACCACAGGCTGGCGGCCGAGTTCGCCCATCCCAGCCATCACTCTTCCACCTGCTCCTTAGAGAAGGGAAGATGAGCAAGTCAAGCTCAAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGAAAAAGGATGGCACTGAGAAGCGGGGCCGTGGCAGACCCCACTAGTAGCCTCCGGTGAGTCCCGGGACATTGCTGGTATGGAGTCAGAAGGAGCCCAGCGAAATGCCAACACCTAAGAGACCTCGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCTAAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGAAAGACCCAAAAAACTGGAGAAGGAGGAAGAGAAGGGCATCTCGCAGGAGTCCTCACCGAAGGAGCAGCTTCCTTCTGGGACTGGACAGCTTTGATaGCCGCTGCAGGGTCCCTATAGGCTAAGTGGGGAGGACTTTTCCCCTGGCCTGTTCCCACCCCCAACCCCCGCCCACCCACTCATACATATGTGCCCTCCTGGACAAGTCTAATGTCCCACTTAGCCGCACCCTGCACCTGCTGCGTCCCCACTCCTTTGGTGGTGGGGACATTGCTCTCTGTGCTTTTGGTTTGGGGGCCACCTCTCTGCTCCTCCACTGTTCCCTCTGGCTTCCCATAGAGGGGCCTGGGAGGGCTCCCCTGGCCTTAAAAGGGGCCCAAGCCCCCATTCTGGGACACCCCACTCCACTGTCCTGGCAGCAGCAGGTGTGGCCAATGGAGGGGGGTGCTGGCCCCCAGGATTCCCCCAGCCAAACTGTCTTTGTCACCATGTGAGGCTCACACCTTTCATCCTTCCCCACCTTCCCTAGTCCCTGCACTAGATTGGACAGCCCCCATTGGCTACAGGAAAGCAGGAGGGGTGTGAGTCCCCTACTCCCTCTTTGCAGTGGCCCCAGCCCCCTTACCCTCTGCCTGGGTACTGAGTGCATATTGCAGTGATGGAGATGCAGTCACCTATTGTCCAGGTGAGGCCCATGAGCCCTGTGGCAGCCACCTGAGGTGGGCTGGGGCTGCTCCCCCACCCCTACTTTGCTTCTACCACTTGGCCATTTCCCCCTCCTCAGATGGGGCACCAATAACAAGGAAACCACCCTTCCCACTCCCAACCCTCCTGCTCCTGCCACCCCCCAAGGTTCTGGTTCCATTTTTCCTTTGTTCACAAACTACCTCCAGACAGTTGTTTTGTTTTTGGTTCAATGTTCCATTCTTTGACATCCATCATTGCTGCTGCTACCAGCGCTAAATATTTGTTCATCCACATTGCCTCCTGCTCTGCACAAGATCCCCTCCCCCAAGTTACTCTTCGTGGGGAAGAGGGGCTGGGGCATGGCAGGCTGGGTGACCGACTACTCCAGTCGGGGTCCTGCCCCTAGGATGCTGCCCCAGAGAGAGCAAGGGGGCCCGAATCCACGATAAAGGGTGTAGGGGCCACCTCCTTCCCCTGGTCTGTCAGGGAGGGGTAGCCATTATTTGTCCCACCCTGGGGCTCCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATTTAAAAAAAA
>XM_028846865.1
CTCTCTAACGAGCGCGTTTCTCTTCACCCCCTCGGCCCGCGTGGACCCCCGTCCACCCCCGCACACCCTGGGGGGGGCCTGGCCCACACGCCCAGGAAGCCCCTAGAGGTGACTCTCCCTGGGACCACTGTACCAGGGAGGAAGGATACCGCCACCCGTCACCACCCCCCGCGAGAAGCTCCTTCGTGACTCCTCTGTGCGTGCCTTCCCACACCTCCTCCGTCCGGGACTGCGAGGAGTGGGCGGTCGACTCGAGTTCGCAGCCCAGGCCTCCCACACGCCCCTCCCCGCCGTCAGCACCCACCCGCGCGGCAGCGGCGGCTGGCGGGCGGCCGCCCTTTTAAATCCCCGGGCTCATTTGCATGGCCCCGCCCCCTGAGTGACACGGCTGGCGCGGGCGGGCCCGTCCCCCCTGCCCCTGGGTCGCTCTTTTTAAGCTCCCCTGAGCCGGTGCTGCGCTCCTCTAATTGGGACTCCGAGCCGGGGCTATTTCTGGCGCTGGCGCGGCTCCAAGAAGGCATCCGCATTTGCTACCAGCGGCGGCCGCGGCGGAGCCAGGCCGGTCCTCAGCGCCCAGCACCGCCGCTCCCGGCAACCCGGAGCGCGCACCGCAGGCCGGCGGCCGAGCTCGCGCATCCCAGCCATCACTCTTCCACCTGCTCCTTAGAGAAGGGAAGATGAGCGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGGCAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACACCTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGGTGCTGCCAAGACCCGGAAAACCACCACAACTCCAGGAAGGAAACCAAGGGGCAGACCCAAAAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCGCAGGAATCCTCGGAGGAGGAGCAGTGACCCATGCGTGCCGCCTGCCCCTCACTGGAGGAGCAGCTTCCTTCTGGGACTGGACAGCTTTGCTCCGCTCCCACCGCCCCCGCCCCTTCCCCAGACCCACCATCACCACCGACTCTGGCCGCCACCCCCATCTTCCACCTGTGCCCTCACCACCACACTACACAGCACACCAGCCGCTGCAGGGCTCCCATGGGCTGAGTGGGGAGCAGTTTTCCCCTGGCCTCAGTTCCCAGCTCCCCCTGCCCACCCACGCATACACACATGCCCTCCTGGACAAGGCTAACATCCCACTTAGCCGCACCCTGCACCTGCTGCGTCCCCACTCCCTTGGTGGTGGGGACATTGCTCTCTGGGCTTTTGGTTTGGGGGCGCTCTCTCTGCTCCTTCACTGTTCCCTCTGGCTTCCTGTAGTGGGACCTGGGAGGGTTCCCCTGGCCTTAAAAGGGGCCCAAGCCCCATCTCATCCTGGCCCGCCCTACTCCACTGCCCTGGCAGCAGCAGGTGTGGCCAGTGGAGGGGGTGCTGGCCCCAGGATTCCCCCAGCCAAACTGTCTTTGTCATCACATGGGGCTCACACTTTTCATCCTTCCCCACCTTCCCTAGTCCCTGCACTAGGTTGGGCAGCCCCCTTTGGCTCCAGGAAGGCAGGAGGGGTGTGTCCTTACTCCCGCTTCACTGTGGCCACAGCCCCCTTGCCCTCCGCCTGGGATCTGAGTACATGTGGTAGTGATGGAGATGCAGTCGCTTATTGTCCAGGTGAGGCCCACGAGCCCTGTGGCCGTCACCTGAGGTGGGCTGGGGCTGCTCCCCTCACCCTACTTTGCTTCCGCCACTCAGCCATTTCCCCCTCCTCAGATGGGGCACCAATAACAAGGAGCTCACCCTGCCCTCTCCCAACCCCCCTCCTGCTCCTCCCTGCCCCCCAAGGTTCTGGTTCCATTTTTCCTCTGTTCACAAACTACCTCTGGACAGTTGTGTTGTTTTTTGTTCAATGTTCCATTCTTCGACATCCGTCATTGCTGCTGCTACCAGCGCCAAATGTTCATCCTCATTGCCTCCTGTTCTGCCCACGATCCCCTCCCCCAAGATACTCTTTGTGGGGAAGAGGGGCTGGGGCATGGCAGGCTGGGTGACCGACTACCCCAGTCCCAGGGAAGGTGGGGCCCTGCCCCTAGGATGCTGCAGCAGAGTGAGCAAGGGGGCCCAAATCGACCATAAAGGGTGTAGGGGCCGCCTCCTCCCCCTGTTCTGTTGGGGAGGGGTAGCCGTGATTTGTCCCAGCCTGGGGCTCCCCCTCTGGTTTCCTATTTGCAGTTACTTGAATAAAAAAAATATCCTTTTCTGGA

Publications

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