Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB3P11
Plot displaying the genomic locations of a retrocopy (in chr6) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr6:177094872-177095315  UCSC
Strand +
Parental Sequence XM_001091672.4
Parental seq. overlap 396 bp
Parental seq. overlap (%) 11.1%
Genomic Region Intergenic
Retrocopy Summary HMGB3P11, located on chr6:177094872-177095315, is a retrocopy of the parental gene HMGB3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB3
Full Name N/A
Also known as -
Coordinate chrX:146980465-146990079
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGB3P22
Chimpanzee Pan troglodytes HMGB3P7
Bonobo Pan paniscus HMGB3P7
Gorilla Gorilla gorilla HMGB3P8
Orangutan Pongo abelii HMGB3P10
Gibbon Nomascus leucogenys HMGB3P3
Green monkey Chlorocebus sabaeus LOC103232742P9
Crab-eating macaque Macaca fascicularis HMGB3P11
Baboon Papio anubis HMGB3P6
Golden snub-nosed monkey Rhinopithecus roxellana HMGB3P7
Marmoset Callithrix jacchus Without Homology
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB3P11
CAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACAATGTCTGGGAAAGAGAAGTCGAAGTCTGATGAAATGGCAAAGGCGGATAAAGTACGCTGTGATCAGGAAATGAAGGGTTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATTCTAATGCCCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTTTCTTCGGAATTCTGCCCCAAGATGAAATCCACAAACCCCGGCATCTCTATTGGAGACATGGTCAAAAAGCTAGGTGAGATGTGGAAGAACTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCGGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTGTAAGTCGAAAGGAAAGTTTGATGGCGCAAAGGGTCCTGCTACAGTTGCCCGGAAAA
>XM_001091672.4
CAATCAGGCGGCTCTCGTGGAGGCAGCTAGCGCGAGgctggggagcgctgagccgcgcgtcgtgccctgcgctgcCCAGACTAGCGAACAATACAGTCAGGATGGCTAAAGGTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTTAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCCGTCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTATAAGTCAAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAaggtggaagaggaagatgaagaagaggaggaggaagaagaggaggaggaggaggaggaggaggatgaATAAAGAAACTGTTTATCTGTCTTCTTGTGAATACTTAGAGTAGGGGAGCGCCGTAATTGACTCATCTCTTATTTGAGAAGTGTCTGTTGCCCTCATTAGGTTTAATTACAAAATTTGATCACGATCATATTGTAGTCTCTCAAAGTGCTCTAGAAATTGTCATTGGTTTACATGAAGTGGCCATGGGTGTCTGGAGCACCCTGAAACTGTATCAAAGTTGTACATATTTCCAAACATTTTTAAAATGAAAAGGCCCTCTTCGTGTTCTCCTCACTGTGCACTTTGCTGTGGGTGTGACAAGGCATTTAAAGATGCTTCTGGCTTTTGTTTTTTAATTTGTAAGGTGGTGTTAACTATGGTTATTGGCTAGAAATCCTGAGTTTTCAACTGTATATATCTATAGTTTGTAAAAAGAACAAAACAACCAAGACAAACTCTTGATGCTCCTTGCTCGGCGTTGAGGCTGTGGGGAAGATGCCTTTTGGAGGGGCTGTAGCTCAGGGCGTGCACTGTGAGGCTGGACCTGTTGACTCTGCAGGGGCATCCATTTAGCTTCAGGTTGTCTTGTTTCTGTATATAGTGACATAGCATTCTGCTGCCATCTTAGCTGTGGACAGAGAGGTCAGCTGGCATGAGAATTTTTTTTTTAAGTGCGGTAGTTTTTAAACTTTGTTTTTAAACAAACTGTAGAACTCTTCATTGTCAGCAAAGCAAAGAGCCACTGCATCAATGAAAGTTCAAGAACCTCCTGTACTTAAACATGATTTGCAACGTTCTGTTATTTTTTTTTGTATGTTTAGAATGCTGAAATGTTTTTGAAGTTAAATAAACAGTATTACATTTTTAAAACTGTTCTCTATTATAACAGTCAATTTCTGACTCAGCAGTGAACAAACCCCCTTTCCATTGTATTTGGAGACTGGCCTCCCTATAAATGTGGTAGCTTCTTTTATTACTCAGTGGCCAGCTCACTTAGGGCTGAGATGGAGAGGGCTACTTGAAGCTGCTGTGTGGTTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGCTAAGAAAAGGACATAGGCAAGGGTCAGTAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTAAGGCTATCTAGGTTTAACTGTTGTCCCACCTCTACCCCCTATTTTGTGGGGCCAAATGTATTGCTAAACAGCAATTTCAGAGTGTATGGTGTGTCAAAAATTCAGGCCTGATTTTTTTTTCTCGTTCACCCCTATTTCCGCCCCCCCCCCCCGCCCCGTGCTCCTGGCACATACCACATTATTTGTGGTGCCCAACATTTGGGATCTTGAGCCTGCTGCTGGTCTCCTGGATGCCAGTGAGGGTATGTGGGATGGGGTGGTGGGGTAGGGGACAGTATCCATTTTTTTGCTCCTACTTTACTCCTTCAAAACACCAAACACCCCAGGGAAGATTACAGGCTCCATCTTGGGCCACCTGAGCTATGGGGCAGGCTAATGGAATCAAACATTTCTAAGCACTAAATGTATCATGAAAAGTTGAATGGCCTACTCATAAAGTTTAGCTCATTCACTGGAAATGTAGATTGATGTTCAATGTTAAACTGGAAGAAGCTTGGTTTGTGTGTCAGTAGATATATTAGTGGGTAGTGTAACATTTTATCCAGGTTGGGGTGTGGGGAGATGGCCACAGTAGCAAGCGGTGACACTACCATTTTGAAGGCTGATATGTATATACATCATTACTTTCTGTAGCAATGAAAGATACAGTACTGTGTTGTGGGTGAGTGTTGCTATTGCCCAGCATTAATATTTGGGTGTGTATGTTTGAGGCTATGAGACACGCAGGAGTGTTTTTGTGGTATTAATTTTAAGAGAAAGCAGCTTTTTCTTAAAATTCACTGTTCAGAAACTTGCATGTCTGGAGGCGGTGTCCTCTCCACCCTGTCGGGTCCTGGATGAGTACAAGTTATGGTCATGGTCACAGCCTGATATCTATGTATTCATAGCCATTCCCTCTCCCATCAGAACTGTTTGTCCTGAATGTGTGCTCTAGTTCTAGAAAATGACCACTAATTTAAAAAACTCGGTTGTGAGGTTTGCCCAGAAGCGCTTGCTCCAGAATTGCCCCTCCTGCTTCAGCCATGTCCTTGTCACTTGGCATTCTAAGCTAAAGCTTTAGCTTCCCAATTCATGATGTGCTAGGCCAAGATTCGGGAGCTGTTGCCAGCCTCGTCAAATATGGAAGAGAAACCTGTAGTCAAAAGGGAGTGATTTGTTAAGTGGTGCCTGTCTATCGTATCTAGATGTACCAAGCAGGGAAGGGCAAAGGATGGAAAGGGGTAACTTTTGTGCTTCCAAAGTAGCTAAGCAGAAGTGGGGAAGCAGTTTGGCCAAATGATCTTTGATTAGGCAAACACTGAGTTTTAAAGAGGCCATCAAGTTGAGGCCACTTGGTCCATTAGCTGATGCAGCAAGATCACTACTCAACGTTTTCACACTGTCACAAGATTGCTCCTCTAATGGAATAATGCCCTAGTTTCTCTGAGATGCGGTAAGTGGTATGATGTTACCTAAGGCTTAGGCTTAGCTTGATTTCTGGGCCCACTATATGTGTTCTTAAGATGCCAACCTGTTGCTTTTTTTTTTTTTTTCCTCCATTTAAAAGGATAGTACCTACTCCCTCTAACCACCTCACCCCATTCTTGAATGACGTTTTATCCTTCGGAAAGAACAAGGCTGTGATGTAGTGACTATtgtctgtgtctctgtgtgtctgttcttgtcACAAATGTATTTGGGGACGTTGGATGCATTCATTTTCTGTAATAAAGTTTCTTAATCGCTCTTCCCAAAAAGTAA

Publications

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