Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HMGB3P26
Plot displaying the genomic locations of a retrocopy (in chr18) and its respective parental gene (in chrX). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr18:73113659-73114302  UCSC
Strand +
Parental Sequence XM_001091672.4
Parental seq. overlap 512 bp
Parental seq. overlap (%) 14.3%
Genomic Region Intragenic (SPIRE1)
Retrocopy Summary HMGB3P26, located on chr18:73113659-73114302, is a retrocopy of the parental gene HMGB3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HMGB3
Full Name N/A
Also known as -
Coordinate chrX:146980465-146990079
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HMGB3P35
Chimpanzee Pan troglodytes HMGB3P21
Bonobo Pan paniscus HMGB3P21
Gorilla Gorilla gorilla HMGB3P22
Orangutan Pongo abelii HMGB3P25
Gibbon Nomascus leucogenys HMGB3P11
Green monkey Chlorocebus sabaeus LOC103232742P8
Crab-eating macaque Macaca fascicularis HMGB3P25
Baboon Papio anubis HMGB3P20
Golden snub-nosed monkey Rhinopithecus roxellana HMGB3P36
Marmoset Callithrix jacchus HMGB3P36
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HMGB3P26
GGCGCTGCCCAGACTATCGAACAATACAGTCAGGATGGCTAAAGGTGACCCCAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGATGTGCAGAGAACATAAGAAAAGCCCAGAGGGCTCTGTCAATTTTGCAGAATTTTCCAAGTGCTCTGAAAGGTGGAAGACAATGTCTGGGAAAGAGAAGTCTAAATTTGATGAAATGGCAAAGGTGGATAAAGTACAGTACCATTGAGAAATGAAGGATTATGGACCAGCTAAGGGTGGCAAGAAGAAGGATCCTAATGCCCTGAGAAGGCCACCATCTGGATTCTTCCTGCTCTGTTCAGAATTCCACCCCAAGATCAAATTCATAAACTCTGGCATCTCTATTGGAGACGTGGCAAAAAAGCTGGGTGAGGTGTGGAATAACTTAAATGACAGTGAAAAGGAGCCTTACACCACTGAGGCGGCAAAGCTGAAGGAAAAGTGTGAGAAGGATGTTTCTGACTATAATTCGAAAGGAAAGTTTGATGGAGAAAAGGGTCCTGCTAAAGTTGCCCAGAAAAGGGTG
>XM_001091672.4
CAATCAGGCGGCTCTCGTGGAGGCAGCTAGCGCGAGgctggggagcgctgagccgcgcgtcgtgccctgcgctgcCCAGACTAGCGAACAATACAGTCAGGATGGCTAAAGGTGACCCGAAGAAACCAAAGGGCAAGATGTCTGCTTATGCCTTCTTTGTGCAGACGTGCAGAGAAGAACATAAGAAGAAAAACCCAGAGGTCCCTGTTAATTTTGCAGAATTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACGATGTCCGGGAAAGAGAAATCTAAATTTGATGAAATGGCAAAGGCAGATAAAGTGCGCTATGATCGGGAAATGAAGGATTATGGACCAGCTAAGGGAGGCAAGAAGAAGAAGGATCCTAATGCTCCCAAAAGGCCACCGTCTGGATTCTTCCTGTTCTGTTCAGAATTCCGTCCCAAGATCAAATCCACAAACCCCGGCATCTCTATTGGAGATGTGGCAAAAAAGCTGGGTGAGATGTGGAATAATTTAAATGACAGTGAAAAGCAGCCTTACATCACTAAGGCAGCAAAGCTGAAGGAGAAGTATGAGAAGGATGTTGCTGACTATAAGTCAAAAGGAAAGTTTGATGGTGCAAAGGGTCCTGCTAAAGTTGCCCGGAAAAaggtggaagaggaagatgaagaagaggaggaggaagaagaggaggaggaggaggaggaggaggatgaATAAAGAAACTGTTTATCTGTCTTCTTGTGAATACTTAGAGTAGGGGAGCGCCGTAATTGACTCATCTCTTATTTGAGAAGTGTCTGTTGCCCTCATTAGGTTTAATTACAAAATTTGATCACGATCATATTGTAGTCTCTCAAAGTGCTCTAGAAATTGTCATTGGTTTACATGAAGTGGCCATGGGTGTCTGGAGCACCCTGAAACTGTATCAAAGTTGTACATATTTCCAAACATTTTTAAAATGAAAAGGCCCTCTTCGTGTTCTCCTCACTGTGCACTTTGCTGTGGGTGTGACAAGGCATTTAAAGATGCTTCTGGCTTTTGTTTTTTAATTTGTAAGGTGGTGTTAACTATGGTTATTGGCTAGAAATCCTGAGTTTTCAACTGTATATATCTATAGTTTGTAAAAAGAACAAAACAACCAAGACAAACTCTTGATGCTCCTTGCTCGGCGTTGAGGCTGTGGGGAAGATGCCTTTTGGAGGGGCTGTAGCTCAGGGCGTGCACTGTGAGGCTGGACCTGTTGACTCTGCAGGGGCATCCATTTAGCTTCAGGTTGTCTTGTTTCTGTATATAGTGACATAGCATTCTGCTGCCATCTTAGCTGTGGACAGAGAGGTCAGCTGGCATGAGAATTTTTTTTTTAAGTGCGGTAGTTTTTAAACTTTGTTTTTAAACAAACTGTAGAACTCTTCATTGTCAGCAAAGCAAAGAGCCACTGCATCAATGAAAGTTCAAGAACCTCCTGTACTTAAACATGATTTGCAACGTTCTGTTATTTTTTTTTGTATGTTTAGAATGCTGAAATGTTTTTGAAGTTAAATAAACAGTATTACATTTTTAAAACTGTTCTCTATTATAACAGTCAATTTCTGACTCAGCAGTGAACAAACCCCCTTTCCATTGTATTTGGAGACTGGCCTCCCTATAAATGTGGTAGCTTCTTTTATTACTCAGTGGCCAGCTCACTTAGGGCTGAGATGGAGAGGGCTACTTGAAGCTGCTGTGTGGTTTTGTTTGTGTCTGAGTGGCATTCAGATGAAGTCTGGAGGAGCTAAGAAAAGGACATAGGCAAGGGTCAGTAGCCTTCCAAGGTATAGGAAGGTGGGTGATTAGGACTAAGGCTATCTAGGTTTAACTGTTGTCCCACCTCTACCCCCTATTTTGTGGGGCCAAATGTATTGCTAAACAGCAATTTCAGAGTGTATGGTGTGTCAAAAATTCAGGCCTGATTTTTTTTTCTCGTTCACCCCTATTTCCGCCCCCCCCCCCCGCCCCGTGCTCCTGGCACATACCACATTATTTGTGGTGCCCAACATTTGGGATCTTGAGCCTGCTGCTGGTCTCCTGGATGCCAGTGAGGGTATGTGGGATGGGGTGGTGGGGTAGGGGACAGTATCCATTTTTTTGCTCCTACTTTACTCCTTCAAAACACCAAACACCCCAGGGAAGATTACAGGCTCCATCTTGGGCCACCTGAGCTATGGGGCAGGCTAATGGAATCAAACATTTCTAAGCACTAAATGTATCATGAAAAGTTGAATGGCCTACTCATAAAGTTTAGCTCATTCACTGGAAATGTAGATTGATGTTCAATGTTAAACTGGAAGAAGCTTGGTTTGTGTGTCAGTAGATATATTAGTGGGTAGTGTAACATTTTATCCAGGTTGGGGTGTGGGGAGATGGCCACAGTAGCAAGCGGTGACACTACCATTTTGAAGGCTGATATGTATATACATCATTACTTTCTGTAGCAATGAAAGATACAGTACTGTGTTGTGGGTGAGTGTTGCTATTGCCCAGCATTAATATTTGGGTGTGTATGTTTGAGGCTATGAGACACGCAGGAGTGTTTTTGTGGTATTAATTTTAAGAGAAAGCAGCTTTTTCTTAAAATTCACTGTTCAGAAACTTGCATGTCTGGAGGCGGTGTCCTCTCCACCCTGTCGGGTCCTGGATGAGTACAAGTTATGGTCATGGTCACAGCCTGATATCTATGTATTCATAGCCATTCCCTCTCCCATCAGAACTGTTTGTCCTGAATGTGTGCTCTAGTTCTAGAAAATGACCACTAATTTAAAAAACTCGGTTGTGAGGTTTGCCCAGAAGCGCTTGCTCCAGAATTGCCCCTCCTGCTTCAGCCATGTCCTTGTCACTTGGCATTCTAAGCTAAAGCTTTAGCTTCCCAATTCATGATGTGCTAGGCCAAGATTCGGGAGCTGTTGCCAGCCTCGTCAAATATGGAAGAGAAACCTGTAGTCAAAAGGGAGTGATTTGTTAAGTGGTGCCTGTCTATCGTATCTAGATGTACCAAGCAGGGAAGGGCAAAGGATGGAAAGGGGTAACTTTTGTGCTTCCAAAGTAGCTAAGCAGAAGTGGGGAAGCAGTTTGGCCAAATGATCTTTGATTAGGCAAACACTGAGTTTTAAAGAGGCCATCAAGTTGAGGCCACTTGGTCCATTAGCTGATGCAGCAAGATCACTACTCAACGTTTTCACACTGTCACAAGATTGCTCCTCTAATGGAATAATGCCCTAGTTTCTCTGAGATGCGGTAAGTGGTATGATGTTACCTAAGGCTTAGGCTTAGCTTGATTTCTGGGCCCACTATATGTGTTCTTAAGATGCCAACCTGTTGCTTTTTTTTTTTTTTTCCTCCATTTAAAAGGATAGTACCTACTCCCTCTAACCACCTCACCCCATTCTTGAATGACGTTTTATCCTTCGGAAAGAACAAGGCTGTGATGTAGTGACTATtgtctgtgtctctgtgtgtctgttcttgtcACAAATGTATTTGGGGACGTTGGATGCATTCATTTTCTGTAATAAAGTTTCTTAATCGCTCTTCCCAAAAAGTAA

Publications

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