RCPedia: Rtcs

Summary

Retrocopy Name	GTF2A2P5	Plot displaying the genomic locations of a retrocopy (in chr10) and its respective parental gene (in chr4). Each line represents a retrocopy.
Species	Choloepus didactylus
Coordinates	chr10:49334893-49335345 UCSC
Strand	+
Parental Sequence	XM_037833821.1
Parental seq. overlap	396 bp
Parental seq. overlap (%)	50.2%
Genomic Region	Intergenic
Retrocopy Summary	GTF2A2P5, located on chr10:49334893-49335345, is a retrocopy of the parental gene GTF2A2. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name	GTF2A2
Full Name	N/A
Also known as	GTF2A2
Coordinate	chr4:119902230-119916685
Strand	+
Gene summary	N/A

Homology

Species	Scientific Name	Retrocopy
Gorilla	Gorilla gorilla	GTF2A2P3
Orangutan	Pongo abelii	GTF2A2P3
Gibbon	Nomascus leucogenys	GTF2A2P1
Green monkey	Chlorocebus sabaeus	GTF2A2P3
Crab-eating macaque	Macaca fascicularis	GTF2A2P4
Rhesus	Macaca mulatta	GTF2A2P4
Baboon	Papio anubis	LOC100999448P4
Golden snub-nosed monkey	Rhinopithecus roxellana	GTF2A2P4
Marmoset	Callithrix jacchus	GTF2A2P1
Mouse lemur	Microcebus murinus	GTF2A2P2
Dolphin	Tursiops truncatus	GTF2A2P3
Horse	Equus caballus	GTF2A2P1
Egyptian rousette	Rousettus aegyptiacus	GTF2A2P2
Human	Homo sapiens	Without Homology
Chimpanzee	Pan troglodytes	Without Homology
Bonobo	Pan paniscus	Without Homology
Mouse	Mus musculus	Without Homology
Rat	Rattus norvegicus	Without Homology
Chinese hamster	Cricetulus griseus	Without Homology
Rabbit	Oryctolagus cuniculus	Without Homology
Pig	Sus scrofa	Without Homology
Cow	Bos taurus	Without Homology
Sheep	Ovis aries	Without Homology
Dog	Canis familiaris	Without Homology
Panda	Ailuropoda melanoleuca	Without Homology
Cat	Felis catus	Without Homology
Pale spear-nosed bat	Phyllostomus discolor	Without Homology
Velvety free-tailed bat	Molossus molossus	Without Homology
Greater mouse-eared bat	Myotis myotis	Without Homology
Kuhl's pipistrelle	Pipistrellus kuhlii	Without Homology
Greater horseshoe bat	Rhinolophus ferrumequinum	Without Homology
Tasmanian Devil	Sarcophilus harrisii	Without Homology
Opossum	Monodelphis domestica	Without Homology
Platypus	Ornithorhynchus anatinus	Without Homology
Chicken	Gallus gallus	Without Homology
Turkey	Meleagris gallopavo	Without Homology
Zebra Finch	Taeniopygia guttata	Without Homology
Budgerigar	Melopsittacus undulatus	Without Homology
Painted Turtle	Chrysemys picta	Without Homology
Lizard	Anolis Carolinensis	Without Homology
Frog	Xenopus tropicalis	Without Homology
Zebrafish	Danio rerio	Without Homology
Drosophila	Drosophila melanogaster	Without Homology

Expression

Related Sequence

>GTF2A2P5
taatttcttcctcttgagCCGTGGCCTATCAGTTATAAATATACTTTGGGAAGCATTCTTTGGGAGAGCCTAGATGAGATCATACAACCTCAACAGATCACCCTCCACTTAAACTTCACTTTCTACTTCAGCTTGATAAGGCTAGAAATTCAGCATTGACTCAGACAGGAACGAAGTCAGTTTCAGAGACCCTCTAAATACCTACAGATTCTGGGATTATGTGTGGACATTTGTATTTGATGATGTTGAATTCAGAGAGATGACAGAGCTTATTAAGTGGATAAAGTGAAATTGTAGCCTGTGATGGTAAAATATGGGCTCCAATACTCAGAATGAATAGGAAAAAGATGGCTTTTTTATGCCATCTTCTTTCATTAAGTGTCACTTTCTGAAGACGAACATAGAAGAGGCTTTAAAAAACTTGTAGCAATGCAGAAATGATTACACTGTGCT

>XM_037833821.1
GGGGAAGCGCATTCATAAGTGCCTGGTTTCTATGCTTCATCCTTTAAACTACAAAATAAGGACTTCTGAATTTCTGTGGCTCATACCAACATCTAAAAGATTTGAGCATTTCGCAGGGAATTTTTAAgaCATCAATGCAAGcctgaataagaaaaacaatttcttCCTCCAAAGCCATGGCATATCAGTTATACAGAAAtaccactttgggaaacagtctTCAGGAGAGCCTAGATGAGCTCATACAGTCTCAACAGATCACCCCTCAACTTGCCCTTCAAGTTCTACTTCAGTTTGATAAGGCTATAAATTCAGCATTGGCTCAGAGGGTCAGAAACAGAGTCAATTTCAGGggCTCTCTAAATACGTACAGATTCTGCGATAATGTGTGGACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAGCTTATTAAAGTGGATAAAGTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGCTCCAATGCTacagaatgaatagaaaaaaaatggcttttttatGCCATCTTCTGTTATTATTCATCACTTTTTGAAGAGAAGCATAGAAgagactttttttaatttattctagcaATGCAGAAATGACTACACTGTGCTCTACTATCAGAGAATTCCAGTAGAAAGAAGCTTATAACTCTGTAGCCTCTTAATTACCTGTATTATACAGCATGAAGaaacatgacttttttttaatgacaaatcaAAAGTTGTTGCCTTtgtaagaacattctttaatAAACTCATTTTAAAACTCAGTA

>XM_037833821.1 

GGGGAAGCGCATTCATAAGTGCCTGGTTTCTATGCTTCATCCTTTAAACTACAAAATAAGGACTTCTGAATTTCTGTGGCTCATACCAACATCTAAAAGATTTGAGCATTTCGCAGGGAATTTTTAAgaCATCAATGCAAGcctgaataagaaaaacaatttcttCCTCCAAAGCCATGGCATATCAGTTATACAGAAAtaccactttgggaaacagtctTCAGGAGAGCCTAGATGAGCTCATACAGTCTCAACAGATCACCCCTCAACTTGCCCTTCAAGTTCTACTTCAGTTTGATAAGGCTATAAATTCAGCATTGGCTCAGAGGGTCAGAAACAGAGTCAATTTCAGGggCTCTCTAAATACGTACAGATTCTGCGATAATGTGTGGACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAGCTTATTAAAGTGGATAAAGTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGCTCCAATGCTacagaatgaatagaaaaaaaatggcttttttatGCCATCTTCTGTTATTATTCATCACTTTTTGAAGAGAAGCATAGAAgagactttttttaatttattctagcaATGCAGAAATGACTACACTGTGCTCTACTATCAGAGAATTCCAGTAGAAAGAAGCTTATAACTCTGTAGCCTCTTAATTACCTGTATTATACAGCATGAAGaaacatgacttttttttaatgacaaatcaAAAGTTGTTGCCTTtgtaagaacattctttaatAAACTCATTTTAAAACTCAGTA

Publications

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