Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPH1P7
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr24). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chrX:112810196-112811548  UCSC
Strand +
Parental Sequence XM_037817774.1
Parental seq. overlap 1187 bp
Parental seq. overlap (%) 76.2%
Genomic Region Intergenic
Retrocopy Summary HNRNPH1P7, located on chrX:112810196-112811548, is a retrocopy of the parental gene HNRNPH1. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPH1
Full Name N/A
Also known as HNRNPH1
Coordinate chr24:1129219-1137896
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Green monkey Chlorocebus sabaeus HNRNPH1P5
Crab-eating macaque Macaca fascicularis HNRNPH1P6
Rhesus Macaca mulatta HNRNPH1P7
Baboon Papio anubis HNRNPH1P6
Golden snub-nosed monkey Rhinopithecus roxellana HNRNPH1P3
Marmoset Callithrix jacchus HNRNPH1P8
Mouse lemur Microcebus murinus HNRNPH1P1
Dog Canis familiaris HNRNPH1P4
Panda Ailuropoda melanoleuca HNRNPH1P1
Pale spear-nosed bat Phyllostomus discolor HNRNPH1P3
Velvety free-tailed bat Molossus molossus HNRNPH1P1
Kuhl's pipistrelle Pipistrellus kuhlii HNRNPH1P2
Greater horseshoe bat Rhinolophus ferrumequinum HNRNPH1P1
Human Homo sapiens Without Homology
Chimpanzee Pan troglodytes Without Homology
Bonobo Pan paniscus Without Homology
Gorilla Gorilla gorilla Without Homology
Orangutan Pongo abelii Without Homology
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Cat Felis catus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPH1P7
CATGATGCTGAGCACGGAAGGCAGGGAGGGGTTCGTGGTCAAGGTCAGGGGCCTACCCTGGTCCTGCTCAGCCGATGAAGTAATGCGCTTCTTCTCTGATTGCAAAATCCAAAATGGCACATCAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCAAGTGGTGaagcatttgttgaacttgaatCTGAAGATGAAGTGAAATTGGCTTTGAAGAAGGACAGAGAAACCATGGGACACAGATACGTTGAAGTATTCAAGTCCAACAGTGTTGAAATGGATTGGGTGTTGAAGCATACAGGTCCGAATAGTCCTGATACCGCCAATGATGGCTTCGTCCGGCTTAGAGGACTCCCATTTGGCTGTAGCAAGGAAGAAATTGTTCAGTTCTTTTCAGGGTTGGAAATTGTGCCAAATGGGATGACACTGCCGGTGGACTTTCAGGGGCGGAGCACAGGGGAGGCCTTTGTGCAGTTTGCTTCACAGGAGATAGCTGAAAAGGCCTTAAAGAAACACAAGGAAAGAATAGGGCACAGGTACATTGAAATCTTCAAGAGTAGCCGAGCTGAAGTTCGAACCCACTATGATCCTCCTCGAAAGCTCATGGCTATGCAGCGGCCTGGTCCCTATGATAGGCCAGGGGCTGGCAGAGGGTATAATAGCATTGGCAGAGGAGCTGGATTTGAAAGGATGAGGCGGGGTGCCTATGGTGGAGGGTATGGAGGCTATGATGACTATGGTGGCTATAATGATGGGTATGGCTTTGGGTCTGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCATAGATATGGAGATGGTGGGTCCAGTTTCCAGAGCACCACAGGGCACTGTGTGCACATGAGAGGGTTACCTTACAGAGCCACTGAGAATGATATTTACAATTTTTTCTCACCTCTTAACCCCATGAGAGTACACATTGAAATTGGACCTGATGGCAGAGTTACTGGTGAGGCAGATGTTGAATTTGCTACTCATGAAGATGCTGTGGCAGCTATGGCAAAAGACAAAGCCAATATGCAGCACAGATATGTGGAGCTCTTCTTGAATTCTACTGCAGGAACAAGTGGGGGTGCTTATGATCACAGCTATGTAGAGCTGTTTTTGAATTCTACAGCAGGGGCAAGTGGTGGTGCTTATGGTAGCCAAATGATGGGAGGGATGGGCTTATCCAACCAGTCTAGTTATGGGGGTCCTGCTAGCCAGCAGCTGAGTGGTGGGTATGGAGGTGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCTGCAGGAAAACTCCAGTGATTATCAATCGAACCTTGCTTAGGT
>XM_037817774.1
ATTTAGGTTGCGCAGGCGCCCCCTAGCCACTTCTGGTCAGCCGCGCTCAGGTCGCGTTTCCTGTGTCCCCGACGCCGGCGCTCCGCGAGACACGATGATGCTGGGCACGGAAGGCGGCGAGGGCTTCGTGGTGAAGGTGCGCGGCCTGCCCTGGTCCTGCTCCGCCGAGGAGGTGCAGCGCTTCTTCTCGGAATGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCAAGTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAGTTGGCCctgaaaaaagacagagaaactaTGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTGCGTCTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAGATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATCGAGATCTTTAAGAGCAGTCGAGCTGAAGTTAGAACTCACTATGATCCTCCGAGGAAGCTCATGGCCATGCAGAGGCCGGGCCCCTATGACAGGCCTGGGGCCGGCAGAGGGTATAACAGTATCGGCAGAGGGGCTGGCTTTGAAAGGATGAGACGTGGCGCCTACGGCGGAGGCTATGGAGGCTATGATGATTATAATGGCTATAACGATGGCTATGGATTTGGGTCGGATAGATTTGGAAGAGACCTCAATTATTGTTTTTCAGGAATGTCTGATCACAGATACGGGGATGGCAGCTCTACTTTCCAGAGCACAACGGGACACTGTGTACACATGCGTGGATTACCTTACAGAGCCACCGAGAATGACATTTACAACTTTTTTTCACCGCTCAATCCTGTGAGAGTACACATTGAAATTGGTCCTGATGGCAGAGTGACTGGAGAGGCAGATGTTGAGTTTGCTACTCATGAAGATGCCGTGGCAGCTATGTCAAAAGACAAAGCAAATATGCagCACAGATACGTAGAGCTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAGCACAGATACGTAGAGCTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAGATGATGGGAGGCATGGGCTTGTCGAACCAGTCCAGTTATGGAGGCCCGGCCAGCCAGCAGCTGAGCGGCGGCTACGGAGGCGGCTACGGTGGCCAGAGCAGCATGAGTGGATACGACCAAGTTTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATagGTGGCCAAGGAGCCGGGGGCAGCAGCTGCTACAGCAGTGGAAGCCGCGTGGCCGTGGGAGTGAACGGAATGGGGGGGGTGTCGGGCATGTCCAGTGtgagcggggggtggg

Publications

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