Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name HNRNPA3P10
Plot displaying the genomic locations of a retrocopy (in chr12) and its respective parental gene (in chr12). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr12:103553641-103555416  UCSC
Strand -
Parental Sequence XM_015110420.2
Parental seq. overlap 1569 bp
Parental seq. overlap (%) 30.6%
Genomic Region Intragenic (XRCC5)
Retrocopy Summary HNRNPA3P10, located on chr12:103553641-103555416, is a retrocopy of the parental gene HNRNPA3. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name HNRNPA3
Full Name heterogeneous nuclear ribonucleoprotein A3
Also known as -
Coordinate chr12:64307224-64320153
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens HNRNPA3P18
Chimpanzee Pan troglodytes HNRNPA3P4
Bonobo Pan paniscus HNRNPA3P4
Gorilla Gorilla gorilla HNRNPA3P4
Orangutan Pongo abelii HNRNPA3P4
Gibbon Nomascus leucogenys HNRNPA3P12
Green monkey Chlorocebus sabaeus HNRNPA3P5
Crab-eating macaque Macaca fascicularis HNRNPA3P10
Baboon Papio anubis HNRNPA3P9
Golden snub-nosed monkey Rhinopithecus roxellana HNRNPA3P13
Marmoset Callithrix jacchus HNRNPA3P8
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>HNRNPA3P10
GGCCATGATCCAAAGGAACCCAGCGCGGTTGAGAAAATTGTTTATCAGTGGTCTGAGTTTTAAAACTACAGATGGGTTAAGAGAACATTTTGAGAAAGGCAGTACGCTCACAGATTGTGTGGTAATGAGAACTCCAAGCAAACATTCCAGGGGCTTTGGTTTTGTGGCTTACTCTTGTGTTGAAGAGGTGGATACAGCAATGTGTGCTTGACCACACAAGGTTGATGGGTGTGGAGTGGAACCAAAGACAGTTGTTTCTAGAGAGGATTCTGTAAAGCCCGGTGCCCATCTGACAGTGAAGAAAATTTTTGCTGGTAGTATTAAAGAAGATACAGTTTGAGAAATTACTCTGAAAACTATAGCAAGACTGAAACCATACAAGTTATGGATGACAGGCAGAGTGGAAAAAGAATGTACACCTTTAACTTTTGATGATCATGATACAATTGATAAAACTGTTGTTTGGAAACACCATACTATTAACAAGCACAACTGTAAAGTGAAAAGGGCCCTTTCTAAACAAGTGATGCAGTCTGCCGGATCACAGGGGTGACGGAGGTGGATCTGACAACTTTATGGGTTGCGGAGGAAACTCTGGAAGTGGTGCAAGTAATTTTGGCTGTGGTGGAAACTTTGGTGGAAGAGGAGGCTCTGGTGGTGGAGGTAGAGGTGGTGGCAGCAGAGGTGGTTATGGAGGATGTAATGGTGGATATAATGGATGTGGAGGTGATGGTGGCAACAATGGTGGTGGGCCTGCCTACAGCAGTAGTGGGGGCTATGTAGACTGTGGACCAAGATATGAAAACCACGATGGCGGGTATGGTGATAGTGGTGAAGGATATGATGGTTACAACGAAGGACGAAATTTTGGCAGTGGCAACTATTGTGGTGGTGTGAACTATAATGATTCTGGAAATTTTAGTAGACAAAAACCATCAAATTATGAACCCATTAAAGGGTGCAGTTTTGGTGGAAGAAGCTCGGGTAGTTCCTGTTGTGGTGGTTATGGATCTGGTGGTAGACGTGATAGATATGGTAACAGAAGGTCCCAAAAAAAGCAGAGAGGGGCTACATTTCTTAGCAGGAGAAAGAACAAGGAGTTGTCAGAAAAGTTACAGGTTATTTGAGATAGTCATCCCAAATGCATTAGAGGAACTATAAAAATCTGCCGCAGAAGGAATGATGATCCATAGTCAGAAAAGTTATTGCAGCTTAAACAGAAATCCCTTCTTGTGCAGGACTGTCATAGCCAGCTTGCAAAAGTGCAGCTATTAATGAATGCAATACAGTGTCAATTAGATGTACATTCTGGAGTTCTTTTATCTGTTGTAGTTTTGTCTGTTTCTTCTTCATTACATCAAGTATATTGCCCTGTAAATTGTGGTAGTGATACCAGGAATAAAAAAATTAAGAAATTTTAAACTTTTCAATATTTGTGTAGTTTTTCTATATTTTAGTACAGAAACCTTAACAAAATGCAGTTTTGAAGGTATTTTCTTTTGAATTAACAAGTAAAGAAGATTATTGCTAATTACTATTTTGTATAAATTTTGCTAAAGTTAATTATAAAGAAACATATGCTGACTTGCAGCTTAAGGGGAACCTACTGTCCCCATTTCCAAACCATGACATGAATGGGCACTGACATGTGAAGAGAAGAGATATTTGTATGTTTGCAATGTATGTTTTAGATACACAGGATTTGGTATTTAAATTAGCATATTTGTGAATTTAAGAGCATTAAGGTGACCTTCAAATGAAACAATCTCAAAATTC
>XM_015110420.2
agagatggtgttttaccatgttggcaaagctgatctcaaactctccacctcaggtgacccgcctgcctcggtctaccaaaatcctgggattacaggtgtgagccatggcgcccagccAGAGCTTAAGTTTAGACAAAAGCATAAAAAATAACGTCTAAAAACAGCACACAGTCAGGATGAACAACAAATCTGGACCAATACAATGGGGAGGACAAAAAGATGTGAATAAATGGACTGACATTTCATGTTCCTGGAGAGAACTTAGTATCCCATCCCACATTGTTTCGCGATTTAACATTAACATTTATACAAAAGTTATTAATTAGAACAAAAGTTATTGATTAGAATTAACTTGATTAGAAAAACCTGGAAAAACATACCCTAAAGTGCAGCCAGGTGATCACTCTTCTTGATCACCTATGTAGTGTTTCATAGGGTACTCTGGTGTGAATACCACTTTCCAAAGGTCTTTCACTTTGCATTTTTCTTTGTATCCAGAATTGATAAAATTACCAGGACTATTTCACAGTAATCAGACTTAGAAAATCTTAACACTAACTAGACGCTAAGGCTATACATTCTTACAATGTCTCAAGTCTATTGCTGGCCATCAGGAGCACCTGGATACGCAGAATACGTGAAAGTTTGCGAAAAAGGAATCAAAGCAACAGGAGGAGTCTGGTTTGAACGGTTATTTCATCCAAATTACATTAAGGACTGCTAACTGGTTTCTGCCCCACAAAACTACCCTTTGTGCATGTTTCCAAACTATAACGCAGGTCCTCCTGGGGCAACGGTTAAATAAATTAACAAATTCTTAGACTTTGCGCTCCCTTTTCCAAACTCGAAGTCGACCACTCCCCATTTGTTAACAGAAACTTTTAATGTAACTGATTAGATTTCTAACCTTTCCTAGGGAGAACCAGTTCAATTCTAAAAGAGTTGGTCACATGGGTTGCTAAATTAAAATATAAAGCATTTTCTAACAGGGAAGGGAGGCTCGTCAATTGTGGTTATTTTTATCAGTAACTTTAAATatggattcatagattatcaatttatggctggcctgggtgttagaagatgacctaatcccatcccccttttcatgtaaaaaactgaaactacagctctgtgaagtcaaatgatttaaaatcatctgactaggccgagaaaggattagatctcTAGAGCATTACGGTAACAATCTTTCGCAAACTGGTAGCATTATCTGGCGACCCTGCTTTTCTGAAAATCTTGTCAATTATTCAGTTCCTTAAATTCCGTCAGCTACAACAGATGCATCAGCTCTTTCCACACTAACTTGAAAGAAGCACATTAGAAAATAGTCCTGACTTGTTTCTTGAGATCAGTAACTAATGAACTGACCTCCACCAGTCCTGCCTCAGGTCGTTAATGGTAAAAATTCTGTATGTCGGCCGCGTTTTGAGGCCTGCCCAGGGTGCCTGTGATTCCTACACGTCGGAGCCGCAGGGATTTTCAGTACATGCCCTCAGGTGGGCGCCGCAGTCACAGACACTGGTCCCTGGCATTTGGAAACAGGATAGGTGGTCCGAAGGGCTAAGGGGTTTTACCTGCAACCTTTAAATTACAAGCAAGAAAAACGTAGGTTTTATTTCGGGCACAGGAATGGAATGAATTCGGAAAAGGAAAACTAGAGGCCTGCGGGGGAAGGAGGCACAAGCGCGAGAAGAAAAGGAAAGGCCTTTCTCTCTGGTGACGCGCGATCACGAGGCGTTTTCTCTACGTGGACGCTCACCATTGGCGGAGACCGAACTGACGTCCCGGAACTCGTCCGGACGCGAACGGCGCCAAGGCGGTCCTGCCCTGAAAGTCGGCGAGGcgcgcgcgctcccgcggcacgccgcgcctccgccctccgcccgccaacccgcTGGTCCAGTCGTTCTTCGCGCCCGCTTGGCTCCGCCCCCTTCCCAGCTCGCTCCTCCCCCACCAGACTGGCGGCGCGCGGAAAACGCGTCACGTGACGACTGGCCCCGCCTCTTCCTCTCGGTCCCATATTGAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAGGGCCATGATCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGTTTAAGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTTGTGACTTATTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGACCACACAAGGTTGATGGGCGTGTAGTGGAACCAAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAAATTGAAACCATAGAAGTTATGGAAGACAGGCAGAGTGGAAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAATTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGTAATTTTGGCCGTGGTGGAAACTTTGGTGGAAGAGGAGGCTAtggtggtggaggtggtggtagcagaggtagttatggaggaggtgatggtggATATAATGGATTTGGAGGTGATGGTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAggtggtggatatggtggcggtggtggaggATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAGTCAAATTATGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTCTAAAAACAGCAGAAAAGGGCTACAGTTCTTAGCAGGAGAGAGAGCGAGGAGTTGTCAGGAAAGCTGCAGGTTACTTTGAGACAGTCGTCCCAAATGCATTAGAGGAACTGTAAAAATCTGCCACAGAAGGAACGATGATCCATAGTCAGAAAAGTTACTGCAGCTTAAACAGGAAACCCTTCTTGTTCAGGACTGTCATAGCCACAGTTTGCAAAAAGTGCAGCTATTGATTAATGCAATGTAGTGTCAATTAGATGTACATTCCTGAGgtcttttatctgttgtagctttgtctttttctttttcttttCATTACATCAGGTATATTGCCCTGTAAATTGTGGTAGTGGTACCAGGAATAAAAAATTAAGGAATTTTTAACTTTTCAATATTTGTGTAGTTCAGTTTTTCTACATTTTAGTACAGAAACTTTAACAAAATGCAGTTTTGAAGGTGTTTCCTTGTGAGTTAACAAGTAAAGAAGATCATTGTTAATTACTATTTTGTATGAATTTTGCTAAAGTTAACTGTAAAGAAACACCTGCTGACTTGCAGTATAAGGGGAATCTATAGTCTCCCCATTTCCAAACCATGATATGAATGGGCGCTGACATGTGGAGAGAATAGATAATTTGTGTGTTTGCAATGTGTGTTTTAGATAAATAGGATTGGGTATTTAAATTAGCATTTGTGAATTTAATAGCATTAAGATTACCTTCAAATGAAAAAAATCTCAAAATTTCTATTTGGTTTTTGTGCATTTTCTTTTAAAATGTAATCATATGATTTTAGTGTGTTAGACTTGCTGAGTCCTAGCTGTGTTTAGAACATCTCCATACATTTACCTTGGTCAAATTTGAACTGCTGCCATAGGTTTTGGGTGTAAAGAATGTTTACTGCCCTCCATTTAAATTCTGAAAAGGGATAGTGGATGTTTTCCCTCTCCTATGTTAGAAACTATTCTTAAAAACTTTTCAAAATATAGAACCATTAAGCCTGCTATATCTGAGCAAATTAGTGGGTACCTTTTATTTTTCTTTTTTTAAAGCACAAGAGGCCCATAAATCTTGAGTTATTTTCCTTAGTTTAATTTTTTTTTGATACAGGTTTTCAGAGCAAGAGAATAAAAATGATGCGTTATTAAACCCCTAACTGGCTGGCATGCTTTCCTGTTTGTATTCTATACATTTTGCTGGATGAAACCATGGATAGTTTAGGTATAATTGTTCAAAATAACCTAACTGCAGCAGAAATGTAGCACAGTTGCTTAGTACAGGCTTCTCACTTCCTACAGACCTGAATTCAAATTTGAATAGTCTTGAGTTCTTAAATGCCCAAAGAACACACTGTTATTTCTTGTGTATATTTCAACATAAATCATGTTGTTATCAATTGGTTCGGAAGGCCCTGGTTGAGAAGACTTTTAGATAATAAGGTCatatatatatatatagtaatataAGCCAATGTCTACTGTTTTGCGCCAGCTAGTGCTTACAATTTCATTTGAGCCCTGAGTATGTGCCCTGCTGTTACTCTTTCTTTGGTAGTTGAACGTTGAATTCAAGTCTTTTTTTTTGTTTTAAGAAGTACTAAGCAAACAAGCAATAAAAAGGGGAATGGGGCGTGCTAGTGTTTGAATATGCTCTCTTGTTGCTCTAATTCTGTGCCTCTGTGCATTAATATTTGGATGCATGCAATGCCAGCATGGAAATTGGTCTTCACACATACTGCAGTTTTCCAGAAACATTCACAAAACAATAAATGTAACAGACATTCCATTTGTTAATGGGCATATATGTGAAAAGCAGTGTAGAAAATAGGCTAATATTAGAAAATGGTTAAGTCCTTAATAACTTCAAGTGTGGTTATATAATGGACACTGTCAATGTTCATAACTTAAACCTGGGTACCTGGTCAAAATAATGCTTGGGAAACATTAAAATTGAGCTAAATTGTC

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