Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

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Summary

Retrocopy Name JCHAINP1
Plot displaying the genomic locations of a retrocopy (in chr8) and its respective parental gene (in chr5). Each line represents a retrocopy.
Species Macaca mulatta
Coordinates chr8:85545846-85546681  UCSC
Strand +
Parental Sequence NM_001260886.1
Parental seq. overlap 706 bp
Parental seq. overlap (%) 50%
Genomic Region Intergenic
Retrocopy Summary JCHAINP1, located on chr8:85545846-85546681, is a retrocopy of the parental gene JCHAIN. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name JCHAIN
Full Name joining chain of multimeric IgA and IgM
Also known as IGJ
Coordinate chr5:63087828-63120109
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens JCHAINP1
Chimpanzee Pan troglodytes JCHAINP1
Bonobo Pan paniscus JCHAINP1
Gorilla Gorilla gorilla JCHAINP1
Orangutan Pongo abelii JCHAINP1
Gibbon Nomascus leucogenys JCHAINP1
Green monkey Chlorocebus sabaeus IGJP1
Crab-eating macaque Macaca fascicularis JCHAINP1
Baboon Papio anubis JCHAINP1
Golden snub-nosed monkey Rhinopithecus roxellana JCHAINP1
Marmoset Callithrix jacchus JCHAINP1
Mouse lemur Microcebus murinus Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Sloth Choloepus didactylus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>JCHAINP1
GAGAACTGAAGTCAGCATGAAGAACTATTTTCTCTTCTGGACAGTCTAGGCCATTTTTGTTAAGGCTGTTCTTGTGACACCTCAAGATGAAGATGAGAGGATCATTCCTGTTGATGACAAATGTAAGTGGGCCCAGGTTATTTTCACCATCATCTCTTCTACCAAAGATCCTAATGAGGACACTGTGGAGAGAAACAGCCAAATTGCTGTTCTCCTGGACAATAAGAAGAATATCTCTGATCTCGTCTCAAGGTTGAGAACCAAATTTGTGTACCATTTGTCGTACCTCTGTAAAAAATGTGATCCTACAGAAGTGGAACTGGATAATCAGAGTTCCTGCTACCCAGAGCAGTATCTGTGACAAAGACAGTGCTACAGAGATATGCCACACTGATGTCAGAAACGAGTGCAGCGCAACTATGGTCCCACTTACATATGGTGGTGAGACCGAAATGGTGAAGATAGGCTTGATCCCAGGTTCCTGCTATCCTGACTAATTTGTCATTGCTGACTGCACAATTCTTTATCTTGAGAGGCTCTCCATTTTGATCCAGAAAGTTAATATATTTACTACCAGTGAATATGAAACCTGGATTTGTTTAAGATGGTGTAAAACTAACATCCCCTCCCCCAAAATAATCGAAACAGTAACATTATTGTCTTTATTAGGTAATTACTTCTCAACTATATGGTCACACTGTATTAAAATTTGTCAGTTATCATGCTTGCCTGAAGAGGTATGCTCCCTTAAGAAAACAGTCTCTAGCATTAAAAAAAATAGACAAGGGGAGAAAATAAAACTCAAGGAGTAAAATCAGGAGGCATAACAAAATGTT
>NM_001260886.1
CACAGTTGTGATTGTTTTTAGTTTGTTAGCTGCCTGGAGTGTTATTTTAAGAAAGCAGAAGCACCATCATTTGCACACTCCTTATAGATCACACACCTTAACCCTGACTTTTTTTGCTCCAGTTTTTCAGAAGAAGTGAAGTCAAGATGAAGAACCATTTGCTTTTCTGGGGAGTCCTGGCCATTTTTGTTAAGGCTGTTCATGTAAAAGCTCAAGAAGGTGAAAGGATTGTTCTTGTTGACAACAAATGTAAGTGTGCCCGGATTACTTCCAGGATCATCCGTTCTTCCGAAGATCCTAATGAGGACATTGTGGAGAGAAACATCCGAATTATTGTTCCTCTGAACAACAGGGAGAATATCTCTGATCCCACCTCACCATTGAGAACCAAATTTGTGTACCATTTGTCTGACCTCTGTAAAAAATGTGATCCTACAGAAGTGGAGCTGGATAATCAGATAGTTACTGCTACCCAGAGCAATATCTGTGATGAAGACAGTGCTACAGAGACCTGCTACACTTATGACAGAAACAAGTGCTACACAGCTGTGGTCCCACTCACATATGGTGGTGAGACCAAAATGGTGCAAACAGCCTTAACCCCAGATTCCTGCTATCCTGACTAATTTAAGTCATTGCTGACTGCATAGCTCTTTTTCTTGAGAGGCTCTCCATTTTGATTCAGAAAGTTAGCATATTGATTACCAATGAATTTGAAACCAGGGtttttttttttttttttGGATGATGTAAAACCAACTCCTTGCCACCAAAATAATTAAAATAGTCACATTGTTATCTTTATTAGGTAATCACTTCTTAATTATATATTCACACTCTAAGTATCAAAATCTGCCAATTATCATGCTCACCTGAAAGAGGTATGCTTCCTTAGGAATACAGTTTCTAGCATTAAACAAATAAACAAGGGGAGAAAATAAAACTCAAGGAGTAAAAATCAGGAGGTGTAATAAAATGTTCCTCACATTTCCACCCCCTTCTTTTTTTTTTGCCTTTGTCTTGGAGAGTCAGAGCTTCTGCATTTTCTTTACTATTCTCTTTAAAACAAGTTTTACTGTGTAGAGAATACATATGTATAAACATAGGTCAAATATATGTCTTCATTAGGAAAATAATCGGAAAACATGTTCTAGAACTATTTACAAAAATAATTTAAGATGAAATCTCTAATATTTATAAAACTAGCTAAATAAATGCATAATTAAAAATATATTTGGACATAATAGATTTGGAAGCAGATGATACAGACTTCTTTTTTTCATAATCAGGTTAGTGTAAGAAATTCCCGTTTGAAACCATCCATTTTGTAACTGAACCTTGTGAAATATATGTATTTCTTGGTACGTATTCTCTAGCACAGTCTGAGCAATTAAATAGATTCATAAG

Publications

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