Imagem 1

Example: RPL12P6, GAPDH, ENSG00000237984

Summary

Retrocopy Name PTPN11P4
Plot displaying the genomic locations of a retrocopy (in chrX) and its respective parental gene (in chr23). Each line represents a retrocopy.
Species Choloepus didactylus
Coordinates chrX:173793221-173796875  UCSC
Strand +
Parental Sequence XM_037816811.1
Parental seq. overlap 2786 bp
Parental seq. overlap (%) 46.2%
Genomic Region Intergenic
Retrocopy Summary PTPN11P4, located on chrX:173793221-173796875, is a retrocopy of the parental gene PTPN11. Retrocopies of protein-coding genes, also known as processed pseudogenes, are intriguing genomic elements with implications in genome evolution and diseases. While some retrocopies are non-functional, there are examples of retrocopies (retrogenes) acquiring regulatory roles or exhibiting neofunctionalization unrelated to their parental genes.

Parental Gene

Gene Name PTPN11
Full Name N/A
Also known as PTPN11
Coordinate chr23:12063641-12160126
Strand +
Gene summary N/A

Homology

Species Scientific Name Retrocopy
Human Homo sapiens PTPN11P5
Chimpanzee Pan troglodytes PTPN11P5
Bonobo Pan paniscus PTPN11P5
Gorilla Gorilla gorilla PTPN11P4
Orangutan Pongo abelii PTPN11P5
Green monkey Chlorocebus sabaeus PTPN11P2
Crab-eating macaque Macaca fascicularis PTPN11P5
Rhesus Macaca mulatta PTPN11P5
Baboon Papio anubis PTPN11P5
Golden snub-nosed monkey Rhinopithecus roxellana PTPN11P5
Marmoset Callithrix jacchus PTPN11P1
Mouse lemur Microcebus murinus PTPN11P1
Gibbon Nomascus leucogenys Without Homology
Mouse Mus musculus Without Homology
Rat Rattus norvegicus Without Homology
Chinese hamster Cricetulus griseus Without Homology
Rabbit Oryctolagus cuniculus Without Homology
Pig Sus scrofa Without Homology
Cow Bos taurus Without Homology
Sheep Ovis aries Without Homology
Dolphin Tursiops truncatus Without Homology
Horse Equus caballus Without Homology
Dog Canis familiaris Without Homology
Panda Ailuropoda melanoleuca Without Homology
Cat Felis catus Without Homology
Pale spear-nosed bat Phyllostomus discolor Without Homology
Velvety free-tailed bat Molossus molossus Without Homology
Greater mouse-eared bat Myotis myotis Without Homology
Kuhl's pipistrelle Pipistrellus kuhlii Without Homology
Greater horseshoe bat Rhinolophus ferrumequinum Without Homology
Egyptian rousette Rousettus aegyptiacus Without Homology
Tasmanian Devil Sarcophilus harrisii Without Homology
Opossum Monodelphis domestica Without Homology
Platypus Ornithorhynchus anatinus Without Homology
Chicken Gallus gallus Without Homology
Turkey Meleagris gallopavo Without Homology
Zebra Finch Taeniopygia guttata Without Homology
Budgerigar Melopsittacus undulatus Without Homology
Painted Turtle Chrysemys picta Without Homology
Lizard Anolis Carolinensis Without Homology
Frog Xenopus tropicalis Without Homology
Zebrafish Danio rerio Without Homology
Drosophila Drosophila melanogaster Without Homology

Expression

Related Sequence

>PTPN11P4
ACGTCTGGTCCCAAGCAGGCCTCCCTCAGGTCAGTCCTATGTGACCAAATCCAGCGGAGCCTGAGCAGGGTGGTTCCATCCCAGAGCCAGAGGATGGGAGGAAGATTACATTGCAGAGATGGTTTCACCCAAATATCATTGGCGTGGAGGCAGAAAACCTACTGTTGACAAAAGAACCTGCAGATAGCAGTTTTTTGGGCAGAGCCCAGTAAAATAACCCTGGAGACGTCTCTATTTCTGTAAGAAGAAATGGAGCTGTCATGTACATCAAGATTCAGAACACTGATGATTACTATGACCTGTACGGAGGGGAGAAGTTTGCCACTTTGGCTGAGTTGATGCTTTATTATATGGAACATCACCAGCAGTTAAAAGAGAAGAATAGAGATGttattttcctcaaatattttctgaattctgCAGATCCTACCTCTGAAGGGTGGTTTCATGGACATCTTTCTGGGGAAGAAGCAGAGAAATAATTATCtaagaaaggaaaacatggtAACTTTCTTGTACAAGAGAGCCAGAGCCACCCTGGAgattttgttctctctgtccaCACTTGTATGAGAAAGGGAAGAGCAATGACAGCATGTTTAAAGTGACCTACATCATGATTCACTGCCAGGAACTGAAACATGATGTGGGTGGAGGAGAATGGTTTTATTCTTTGACAGATCTCATGGAACAGTACAAGAAGAATCCTGTGGTAGAAGCACGGGCACGGTACTACAGCACAAGCTGACCCTCAACACAGTGTGTATCAATGCTGCTGAAATGAAAGTTGGGTTCGAGAGCTAAGCAAACTAGCTGAGATCACAGATAAAGTCAAACAAGGCTTTTGGGAAGAATTTGAAACACTGCAACAACAGGAGTGCAAACTTCTCTACAACAGAAAAGAAGGTcagaggcaagaaaataaaaacaaaaatagatattaAAACATACTGCCTTTTGATCATACCAGGGTTGTCCTTCAGGATGGTGAGCCCAATGATCCTGTATCAGATTATATCAATGCAAATATTACAATGCCTGAATTTGAAACCAAGTGCAACAATTTAATGCCCAGAATCAGTTACATTAGCACAAAAGGCTGCCTGCAAAACATGGTGAACGACTTCTGGCGGATGGTATTCCAGGAGAACTCACAAGTGATTGTcaagacaatgaaaaaaatggagagagcAAGTAAATGTGTCAAATACCTGTCTGACAAATATGCTCTAAAAGAATATGCAGTCACATGTTAGGAACGTCAAAAAAAGTGCCACTCATGACTATACATTAAAAGAACTTAAACTTTGAAAGGTTGGACAAGGGAATATGGAGAGAATGGCCTGGCAACACCATTTTCAGACCTAGCTGGACCATGGAGTGCCCAGTGACCCTGGAAGTGTGcttggcttcctggaggaagtgcaCCATAAGCAGGAGAGAATTGTGGATGCTGGGCCTGTGTTGATTCACTGCAGTGCTGGAATTGGCTGTACCAGAATATTCACTGTGATTGACATCCTTACTGACATCATCAGAGAAAAAGTTGACTGTGACACTGATGTGCCCAAAACCATTCTGGTGGTGTGGTATCAGAGGTTGGGATGGTCTGAACAGAAGCACAGTACCAATTTATCTATATGGCCATCCAGAACTATACTGCGACACTATAGCACAGATctgaaaaacagcagaaaatcaaGAGGAAAGGGCATGAATATACAAACATTAAGTATTCCCTAGTGGACCTGACAAGTAGAGATCGGAGTCCCCTCCTGCCAGCACCATCCTGTGCAGAAATGAGAGAAGATAATGCTCGAGTCTATGAAAACATGGGGCTGATACAGCAGCAGAAAAGTTTCAGATGAGAAGATGCACCAAAACTTCAGCACAGAAATACATATGAATTTTCACCCTTTCCCAAGAAAGATCAATAAAAGATGCAAGAAAGTTTATGTGAAGAATGAATTTGAATTTGGAAGGTTTGAGCTGTGGTTAACTACCTTTCAGTAAACGAAATTTGAAAGCATTTAAAGAGAGCTGCATACTAACTCAACAATCCCTGATTTCCAGTTATTCATTCTCAGATAAGAAGAAATAATCTCTACAATGGAGATGATGttatattttatagaattttgttttaaattgaggAAGCAGCTAAATTGTCCTCTATATTTTGCAGATGGTGGTGACTCAGATTCTACTTATCagcatttgttctttctctttttataaccctaacaaattaattttttttctccttttagggGATGATAGGGCACTTGCAAGAGGAGAAGTTATTTGGGAAAATTAAGTAACAACATCTATGAAAGTAGGAACAATTTCATTTACCATCACTTATCCAGCAGTGGATAATTCATTTgtatggcctttttttttttttttaagctaaatgATAATTAAGCCAGTGCCCAGACTGTCAGAAGTTGACATTGTAAAATATCATGGAAAAACATCATGGAAAGTTATGAACTAGGATAAGAGGTGTTTTTCCATCTTAGCAGATGACCAATTACCAGTCAGCCTTTTGACTGACAATGTTGTGGTGGAAAAACATTTGTCACATTCTTTGTGCTGGAGTAATTGTCTTGTATTTAGGAAAAAGGCACCTATGGGTAACCAGTCTGCCATGGAAAATCAACCATCACTAGCAAAAGTAGAAGCTGCTAGTGATGTTAGAAAGCTCAAGCTGATTAAGCTGGTGTAAACCAGAAGTCTGACTGAGACATAGAGGGCTTTTAAGAAGCTCCCTGAACCAGTTCTGCTAGCTCTGACCATATTTTCTGAACCATCACTTGGGAAACCAGTCTCATAATGATAGATGTGTTAGGTGGAAAGAACATTTGCAAGTAGAACTACTCCATTGCCACAGAATTGGTAGAGTGAGGAGAACATGATGGCTTCTTAATGCCAATGACATGTAGTAGGCTGGAGTGAAAAGGGACAGTCCTAACAAGGCCTTAACCTTTAATTGGCACTAGctcatttttgttttaaccaAGCAGTAATATCTACTAACCTTCTACCtgaagtgactttcccaaagAATCTCTCTTTGCCCTGTGTGTTGAGTCGTCATTCAGTGAGTGTATGTCAATTAAAGTACTATTGGTTGTCTTAGTTAAGATAATAAAATGCTATGACAACTTTGCCCTTAAGT
>XM_037816811.1
CCGGGCTGTGGGGGGGCGGCTGCACTATCTCCGGGATCCCCAGGCCTGGAGGGGGGTCTGCGCGCGGTCAGCTGGCTCTGCCCCCCCGTCCGGTCCCGAGCGGGCCTCCCTCGGACCAGCCCGATGTGACCAGGTCCAGAGAAGCCTGAGCAGGAGCGGGTCCGTCCCGGAGCCGGAGGAACATGACATCGCGGAGATGGTTTCACCCAAATATCACTGGCGTGGAGGCAGAAAACCTACTGTTGACAAGAGGAGTTGATGGCAGTTTTTTGGCAAGGCCCAGTAAAAGTAACCCTGGAGACTTCACGCTTTCCGTAAGAAGAAATGGAGCCGTCACACACATCAAGATTCAGAACACTGGTGATTACTATGACCTGTATGGAGGGGAGAAGTTTGCCACTTTGGCTGAGTTGGTCCAGTATTATATGGAACATCACGGgcagttaaaagagaaaaatggagatgTTATTGAGCTCAAATATCCTCTGAACTGTGCAGATCCTACCTCTGAAAGgtgGTTTCATGGACATCTTTctgggaaagaagcagaaaaattatTAACTGAGAAGGGGAAACATGGCAGCTTTCTTGTACGAGAGAGCCAGAGCCACCCTGGAgattttgttctctctgtccGCACTGGTGATGACAAAGGAGAGAGTAATGATGGCAAGTCTAAAGTGACCCACGTCATGATTCGCTGCCAGGAACTGAAATACGATGTTGGTGGAGGAGAACGGTTTGATTCTTTGACAGATCTCGTGGAGCACTACAAGAAGAATCCCATGGTGGAAACTCTGGGCACGGTACTGCAGCTCAAGCAGCCCCTCAACACAACTCGTATCAATGCTGCTGAAATAGAAAGTCGGGTTCGAGAACTAAGCAAATTAGCTGAGACCACAGATAAAGTCAAACAAGGCTTTTGGGAAGAATTTGAGACACTACAGCAACAGGAGTGCAAACTTCTCTACAGCCGAAAAGAGGGTcagaggcaagaaaataaaaacaaaaatagatataaaaacaTCCTGCCTTTTGATCACACCAGGGTTGTCCTTCACGATGGTGATCCCAATGAACCTGTTTCAGATTATATCAATGCAAATATTATAATGCCTGAATTTGAAACCAAGTGCAACAATTCAAAGCCCAAAAAGAGTTACATTGCCACACAAGGCTGCCTGCAAAACACAGTGAATGATTTCTGGCGGATGGTATTCCAGGAGAACTCACGAGTGATTGTCATGACAACAAAAGAAGTGGAGAGAGGAAAGAGTAAATGTGTCAAATACTGGCCTGACGAATATGCTTTAAAAGAATATGGTGTCATGCGTGTTAGGAACGTCAAAGAAAGTGCCGCTCATGACTATACGTTAAGAGAACTTAAACTTTCAAAGGTCGGACAAGGGAATACAGAGAGAACGGTCTGGCAATACCACTTTCGGACCTGGCCTGACCATGGCGTGCCCAGCGACCCAGGGGGCGTGCTGGACTTCTTGGAGGAAGTGCACCACAAGCAGGAGAGCATCGTGGACGCTGGGCCTGTGGTGGTTCACTGCAGTGCTGGAATTGGCCGGACAGGAACATTCATTGTGATTGATATCCTCATTGACATCATCAGAGAAAAAGGTGTCGACTGTGACATTGACGTGCCCAAAACCATTCAGATGGTGCGGTCTCAGAGGTCAGGGATGGTCCAGACGGAAGCACAGTACCGGTTTATCTATATGGCTGTCCAGCATTACATCGAAACACTACAGCGCAGGATTGAAGAAGAGCAGAAAAGCAAGAGGAAAGGACATGAATATACGAATATTAAGTATTCCCTAGCAGACCAGACAAGCGGAGATCAGAGTCCCCTCCCGCCTTGTACCCCAACACCATCCTGTGCAGAaaTGAGAGAAGATAATGCTAGAGTCTATGAAAATGTGGGGCTGATGCAGCAGCAGAAAAGTTTCAGATAAGAAGACCTGCCAAAACTTCAGCACAGAAATAGATATGGACTTTCACCCTCTCCCCAGAAAGATCAAGAAAAGATGCAAGAAAGTTTATGTGAAGAATGAATTTCAATTTGGAAGGTTTGAGTTGTGCTTGACTACCTTTTGATAAGCAAAATTTGAAACCATTTAAAGACCACTGTATACTAACGCAACAGTACCTGATTTCCAGTTACTCATTTTCTCAGACAACAAGAAATCATCTCTACAATGTAGACaatgttatattttatagaattttgttttaaattgaggAAGCAGATAAATCGTCCTCTGTATTTTGCCAATGATGGTGACTCAAATTCTGGTTAtcagcatttgtttttgtttctttttataaccttaacaaattaattttcttttcactttgtaGGGGATGATAGGAAACTTGTGAGAGGAGAAATGATTTGAGACAGTTAAGTAACAACATATGTAGAAGTGGGAACAATTTCATTTACCATCACTTATCCAGCAATTGATAATTCATTTTGATGGCCTCTTTTTTTAGTTAAATGATAATTAAGCCAGTGCCCCAGACTGTCAGAAGTTTTGACATTGTAAAAAATCATGGGGAAAAATAATCATGGGGAAAAACAATCATGGAAACCTATGAATTAGGATAAGAGGTGTTTTTTCTTCTTAGCAGATGACCAATTACTACTTAGCCTTTTGACTGAGAAGGTTGTGCTGGGAAAacatttgtcatattttctttgcGTTGGAGTAATTGTCTTGTATTTAGAAAAAAGGCATCTATGGATGACCAGTGCTTCAGTTATCAATTGTTGCTGGCaataccccaaaacttagtggcttaaaacatctctttttttgctcattctttttcagtctgggctgggctcagctgagCTGTTCTTCTGCTAGACTTGCTGGTGGTCACTCATGGAGATGGCAGGTGGACTGAGACACTGAGATGGCTAGGCTTGTCTCTCTCTGCATGTAGTCCTCAGGGTCTGTCCTTCTCCATGTGGCCTCTCCAGCAAGGTAGCTGGACTCTTACATGGCAGCTCAGAGCTCCCAAGAGTACAAAAGTAGAAGTGGCCAGGCCTTCTTAAGACGTAGGCCCAGAACTGTCACAAAATCACTTTTACTGCACTCTACTGATGAAAGCAAATCAGAGGCCCAGTCTAGGTTGAAAAGGGCACTACACAAGGTCATGAGTATCGGGAGGCGTGGCTCATTTGGGGCCACCGGTGGAACAGGCTGCCACTACCAGTGCCATGGAAAAACTGTTGTTAGCAAAAGTAGAGGCTGCTAGTGATGTCGGGAAGCTCAAGCTGCTTAAGCTGGTGTAAGCTGGAAGTCAGACTGAGGAATAGAGGGCTTTTTAAGAAGCTTCCTAAACCAGTTCTGCCAGCTCTAACCATATTTTCTGAACCTTTACTTGGGAAAACCTGTCTCATAAGGATGGATGTGTTAAGGGGACAGAACATTTGAAAGTAGAACTACCCCATTGCTGTGGCGTCTATAGAGTGAGTAgaatgcaatggtttcttaatgCCACTGATTTGCAGTAAACTGGAATGAAAAGGAGCAATCCTAACAAGGCCTCTAACCTTTAATTAGCAGTAGctcatttttgttttaaccaAGCAGTAATATGTGCTAATGTTCTACCTTAAGTGCCTTTCCCAAAGACATCTCTCTTTGCCCTGTGTGTTGAGTCATCATTCGGTGAGTATATTTCAATTAAAGTATTATTGGTTGTCTTTGTAAAGATAATAAAATGCTATGGCAACTTTGCCCTTAAGTTTTCTTGCTTTTAGTCCTGAAAGGAAGGACTAGGTCCAGCCCTGATAGTAAGACCTTTTTGAACACCTTTGAAACCCTGAGATAGTTTGGGCAGAGCCACACTGCCGTTTTCATAGCCAAAATGTACAGTGatctcttctttcctctccacCCTTACTCCACAAACATCCAATGAACTTAGAGTTGCTTTGGAACACAGGTGTGGCCTGAAGGTAACTACCTGCTTAGGGGAATGTAAATGACTACTGTCTTCTTTTCAAGCCTGCAAAGAAAGAGTTTCTAGTTCAGTATTTGCAACAAAGATCTTGTGAAATCCTGTTCTTTTTATTGCATTGTCACATTGAGTAGTTCTCCATTTTGTCTTGATTTTTGTGGTAAAGTTTGGACTCTAGACTTTGGGGGCAGTCTTTCACCAGCATAGAAGGGTTTGATTGTACAAATATTATCTGCTGCATTAATCTCTCTGCCTGTAGCTTAAGATGAGTTGTTTTTGCACTTGCAACTCAAATGCCTGCTCTTAGCTAGATTTTTATAGGACATTAATTAATTTAGATGTCCCTCCACTAAGTAAGCAAACGATCATATTGTTGTGTAAACTTATGCCAAGACAGGATTTCCGGTAGTccccagtttgctaaagcttgtCCAGTATGTTTGGTAAAAGGTGATTGCAAGTCAGATGTGGTGACTTTCCATAGGCAGAGGAACTgtgaagatgggggtgggggtggctccaGGGGacgatttaaaaaaatcatggaaagGAAAGCTCCAAGGATGTGGTTTATGAGGCAGTGAAAGGGCCAGGGTCATAGTAGTCAGTAGTAGGTGAAACAGGAAACCTGGAAAATAGGTGTTAGAGATATGCAATTGCAGTTTGCAGCCAGGGAGTATTTCTGGGTTGTTGGTAGACTCTGTATTTGTACAGCTTCCTAGAGCTGGCTGAGTATATGGTGAAGAAACGATCTGGCACATGATATtggggttaaagaaaaaaaaatagctaaattgCAGTGTATTAAtgggttttttaaagaaaataaaaagacacctCATATCCAATGTGTGGCCCTCTTGAAAATTATGCTTATCTCTCCCACTGAAATCAGTGACTTCACATATGGCTAATtgggaatgagaaaataaatgtgtgaaTATCTCGGTGCCTCTGCCTTCTTACAGAGTCTGGTTGCTTTGGTACAGCCAAGAAAATTGTTAAGATTATTCTTAGGGGTTATCTTACTGGGAATTTTAAGAAGTAATGTAACATCTGGGTTATTTCTAGTTCAGGGGAATGTGGAAAGGGATGCAGTTGTGAAGTGTTTTGTTGTAGATTATTAATCCATAAAGGAAACTTAGACTGTAGAATTAGTACAAACCTGATGcggtttttgttttctgtatgttgtCGGGGGAATAAAGTTTTATATAGCAAGCACATGGCTTCCCTGATTTCAAGATACCTTTATTAGGATCTGTAATCCctttattaattttgttgaaatctttttccctcttcctcttgaACAATAAGTTCCAAAATGTAGTTTATTATATCTTCCATCACtaaaaagtttgttcttttttcaccaTGGGCAGTTCACATAAGGCATAAATATTAAACAGTTGGTTTTAGTATGTCATATAACTTTGCTATATATCAAAACTAATTCTTACAAGTTTTCCTTTTGAACCTCAAAACATGTAATTAATAATTTGCCTGTTTATTTATGACCTAATTGTGattcttttattaataaaagCTAATGAAAAAGGATCCTTTATCAAGCTGATGAGTAGACCTACCTTTACTTTTCCTGCAGTATATGAAGAAGTATTGTACCAGAGTATTAAAagatatgtaatattttattgataAATCTATCCTTTAAAAGGAATACGTTTTAGGATGTCATCATTTTGATGTGAATCATGTAAATGTTGATAATATGCAGTTTATTATACATTTAGTGTTTCAAGAGATTCACTTAATTGCCTTTTGCCCACATATATTATGTAGTCTAtttacagttgtttttttttaaaaaaagacatttaaagaatAGTTTATGTCAAGAAACGTTAGTGGATGTTGATTGTCTCCCCACCTGTATTTATGGGTGTTAGTTCAACTGCTTTGCTAGTTGCAGAGCTGTGTTATCtgaataaaagtgtatttgtaaACTGTATGGGAACTAAAAGTTAGGAATAAAACCATTTTCTTATATTA

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